Solanum dulcamara (climbing nightshade): 129871993
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Entry
129871993 CDS
T09577
Name
(RefSeq) vacuolar protein sorting-associated protein 35A-like
KO
K18468
vacuolar protein sorting-associated protein 35
Organism
sdul
Solanum dulcamara (climbing nightshade)
Pathway
sdul04144
Endocytosis
Brite
KEGG Orthology (KO) [BR:
sdul00001
]
09140 Cellular Processes
09141 Transport and catabolism
04144 Endocytosis
129871993
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04131 Membrane trafficking [BR:
sdul04131
]
129871993
Membrane trafficking [BR:
sdul04131
]
Endosome - Lysosome transport
Rab GTPases and associated proteins
Retromer subcomplex
129871993
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Vps35
Motif
Other DBs
NCBI-GeneID:
129871993
NCBI-ProteinID:
XP_055802789
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All DBs
Position
11:52840472..52850062
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AA seq
790 aa
AA seq
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MITNGVEDEEKWLAAGISGLQQNAFYMHRALDSNNLKDALKYSAQMLSELRTSKLSPHKY
YELYMRAFDELRKLEIFFREETKRGCSIVELYELVQHAGNILPRLYLLCTVGSVYIKSKE
APAKDILKDLVEMCRSIQHPLRGLFLRSYLSQVSRDKLPDIGSEYEGDADTVMDAVEFVL
QNFTEMNKLWVRMQHQGLAREKEKREKERSELRDLVGKNLHVLSQIEGIDLDLYKDMVLP
RVLEQVVNCKDEIAQGYLMDCIIQVFPDEYHLQTLETLLGACPQFQPSVDIKTVLARLME
RLSNYASLSAEVLPEFFQVEAFAKLNSAIGKVIEAQEDMPIAGVVTLYSSLLTFSLHVHP
DRLDYVDQILGACVQKLSGKGKLNDNKATKQIVALLSAPLEKYKDIDTALKLSNYPRLME
YLDDSTSKEMANVLVQNILKNKSCISTAEKVEALFELMKALIRDMDEGVNDELDEDDFQE
EQNSVAQLIQMLHNDDPEEMLKMICAVKKHILTGGPKRLPFTVPPLIFNSLKFVRRLHSH
DENVPEEEASAMRKNFFQILNQIIEALSVVPVPELALKLYLECAEAANDSDLEPVAYEFF
TQAYILYEEEISDSKAQVTAIHLMIGTLQRMHIFGVENRDTLTHKATGYSAKLLKKPDQC
RAVYACSHLFWVDDQDNIKDGERVLLCLKRALRIANAAQQMSNATRGSSGSVLLFIEILN
KYLYFFEKGVSQINVASVQSLIELITTEMQSENTTADPAANAFFASTLRYIQFQKDKGGA
VGEKYEPINS
NT seq
2373 nt
NT seq
+upstream
nt +downstream
nt
atgataactaatggagtcgaagacgaagagaagtggcttgccgctgggatctccggcctt
cagcagaacgcattttacatgcatcgcgctcttgattcgaacaatctgaaagatgcattg
aaatactcggctcagatgctctcggagctccgaacttccaagctttctcctcacaaatac
tacgagctatatatgcgggcatttgatgaattgaggaagttagagatcttcttcagggag
gagacgaagcgtggctgctccattgttgagttgtatgagctcgtgcagcacgctggcaac
attttgcccagattgtatctcctttgtactgtgggttcagtgtacattaaatcaaaggag
gctcctgccaaggatattctcaaagatctggtggaaatgtgccgtagcatacaacatcca
ttacgtgggctcttcctaagaagttacctttcccaagtcagtagggataaactccctgat
ataggatctgaatatgaaggggatgctgacactgtcatggatgcagtagaattcgtgctc
caaaatttcacagaaatgaacaaactttgggtgcgaatgcaacatcagggacttgcacgg
gaaaaggaaaaacgggaaaaagaaaggagcgagcttcgcgatcttgtggggaagaacctg
catgttctaagtcaaattgagggcattgaccttgatttgtacaaagatatggtgcttcca
agagttttagaacaggttgtcaattgtaaagatgagattgcacagggatatttgatggat
tgcatcattcaagtcttccctgatgagtaccacttacaaactcttgaaacattacttggt
gcttgcccccagtttcagccatctgttgatatcaagacagtgcttgctcgtctgatggaa
aggctttcaaattatgcttctttaagtgcagaagtcctacctgagtttttccaggttgaa
gcttttgcaaaactcaatagtgctataggcaaggtgatagaggctcaagaagacatgcct
attgccggagtggtgactttgtattcatcccttttgacattttctcttcatgtccaccct
gatcgccttgattatgtagatcagattctgggtgcatgtgtacagaaactttctggaaaa
ggaaagctcaatgacaacaaagcaacaaaacagatcgtggccctactaagtgctcctctg
gagaagtataaggatatagatactgcactaaagttatcaaattatcctcgtcttatggag
tatcttgatgattcaactagtaaagagatggctaatgttttagttcaaaatattctgaaa
aataagtcttgcatttcaactgctgaaaaggttgaggcacttttcgagttaatgaaagca
ctgattcgagatatggatgagggtgttaatgatgagcttgatgaagatgatttccaggaa
gagcagaattctgttgcacagcttattcaaatgcttcacaatgacgatcctgaagagatg
ctgaagatgatttgtgctgtgaagaagcacattttgacaggagggccaaagagacttcct
tttaccgttcctccccttattttcaactcactaaagtttgttaggcgactacatagtcat
gatgaaaatgtgcctgaggaagaggcatctgctatgcgcaagaatttttttcagattctg
aatcagattattgaggcgctctcagttgttccagtacctgaactagcattgaagttgtac
ttggagtgtgctgaggctgccaatgactctgacctagagcctgttgcctatgaatttttc
actcaagcttatatactatatgaagaagaaatctcggactccaaagcacaggtgactgca
atacacttgatgatagggactcttcagagaatgcacatctttggtgttgagaacagggac
acattaacacacaaagctacaggatactctgcaaagctcttgaagaaacctgatcaatgt
agagctgtgtacgcttgttcacatcttttctgggttgacgatcaggacaatattaaggat
ggagaaagggttttgctttgcttaaagcgagccttaagaattgcaaatgctgctcaacaa
atgtccaatgcaacccgaggcagcagtggatcggtcttactcttcatagaaattctaaac
aagtatctatatttctttgaaaagggggtctcacagattaatgttgcctccgtccagagc
ctgattgaactaatcacaactgaaatgcaaagtgaaaatacaacagcagatcctgcagca
aatgccttctttgcaagcaccctgcgatatatccaattccagaaggataaaggtggtgca
gttggcgagaaatacgagcccatcaactcataa
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