Solanum dulcamara (climbing nightshade): 129872005
Help
Entry
129872005 CDS
T09577
Name
(RefSeq) paired amphipathic helix protein Sin3-like 2 isoform X1
KO
K11644
paired amphipathic helix protein Sin3a
Organism
sdul
Solanum dulcamara (climbing nightshade)
Brite
KEGG Orthology (KO) [BR:
sdul00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03036 Chromosome and associated proteins [BR:
sdul03036
]
129872005
Chromosome and associated proteins [BR:
sdul03036
]
Eukaryotic type
Histone modification proteins
HDAC complexes
Sin3A-HDAC complex
129872005
REST complex
129872005
Heterochromatin formation proteins
Other heterochromatin formation proteins
129872005
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
PAH
Sin3a_C
Sin3_corepress
PAH_ZNF598
Motif
Other DBs
NCBI-GeneID:
129872005
NCBI-ProteinID:
XP_055802804
LinkDB
All DBs
Position
11:60920769..60929678
Genome browser
AA seq
1347 aa
AA seq
DB search
MKRLRDDGYDNPSFKRPFGSSRGESYSPSQVPGSGPGGGGGGSSAGGAGASNPKLTTGDA
LSYLKEVKEMFQSQRDKYDMFLDVMKDFKAQRIDTVGVIARVKDLFKGHPRLILGFNTFL
PKGYEITLNDEDEAPPKKVEFEEAISFVNKIKTRFQNDDHVYKSFLDILNMYRKEHKGID
EVYQEVAVLFNNHPDLLDEFTRFLPDTSGAASAAQTSIGRPSFHRYDERSSAVPMLRQSH
MDKRFRRDRIIGPYAERDLSIERPDLDDDKTMMKLHKDQKRRAEKENRDRRTHDQDYKEP
YNENNEDLSMQHHTDKKKSARKVEAFGGPHEDKDALKNMYSQEFSFCEKVKERLRSPTDY
QAFLKCLHIYSTEIITRTELQSLVADLLGKHPDLLEGFGEFLERCEQDDGFLEGVMRKSR
WNDGHASKLLKDDGKDKEQKRETDGAKEKDRFKEKYWGKSIQELDLSNCKRCTPSYRLLP
DDYPIPTASQKSELGALVLNDHWVSVTSGSEDYSFKHMRRNQYEESLFRCEDDRFELDML
LESVSSTAKRVEELLNAINDNSIGGAFRVEDHFTVLNLRCIERIYGDHGLDTVDILRKNP
SHALPVILTRLKQKQEEWTKCRTDFNKVWSEIYAKNHYKSLDHRSFYFKQQDSKTLSSKS
LLAEIKEIKEKKQKEDDTILSISAGSRHPITPNLEFDYMDSELHEDLYKLIKYSCEEVCS
SKEQLDKVLGLWTNFVEPILGVPCRPHDSEATENDVLLKQHGPKVDGTSIGESDGSPSAD
AITRNSKHSKVISNRDANASPLQVNSSRTSFANADALPKEDGLAVNGEHLTSSDAAPAMG
ADTVHGRVEITSGCGTRQGNGASDDGQVSKSNIDNVPASENDTSRLIPLGNGGFAEGSTI
NGYNDDSADPCKNEKEEGELSPNGDFEEDNFVAFRSGASHNGSGQYQTRGAEEIGSQDAA
GENDADADDEDSENVSEAEEDVSGSESAADECSREEHEEEDDGEHDELDGKAESEGEAEG
TSEAHYAGGDSNVLQMSDRVLLTSKPLTKYVASPVYEGVVKHPQVFYGNETFYVLFRLQQ
ILYERLLSAKLNSASSESKCRTGKDTGSIPYDRFMSALHSLLDGSAENSKFEDDCRSIIG
NQSYVLFTVDKLIYKLVKQLQTVSSDELDCKLLQLYEYERLRKPEKFVDSAYYENAHVLL
QEDSIYRFECTSLPTHLSIQLMDDRADKSEVVAVAVDPNFASYLHNDYLSVKHGKKESSA
VLLKRNKRKRADHDESTALCMAMEHVILVNGLECKMASNSSKISYVLDTEDFFFRQGGKR
RKVSAGRLSCPYQARVERFHRVLMSSL
NT seq
4044 nt
NT seq
+upstream
nt +downstream
nt
atgaaaagattgagagacgatgggtatgataacccttcatttaagcggccatttggttct
tcacgcggagaatcctacagtccatcgcaagttcctggaagtggtccaggtggaggaggt
ggtggcagcagtgctggcggagctggtgctagtaacccaaagctgacaactggtgatgca
ttgtcttatttgaaggaagtcaaggaaatgtttcaaagccaaagggataagtatgacatg
ttccttgatgttatgaaagactttaaggctcaaagaattgatactgttggtgtcatagca
agagtgaaagacttgtttaaagggcatcctaggttgatccttggattcaacactttcttg
cccaagggttatgaaataaccctcaatgatgaagatgaagctcctccaaagaaagttgag
tttgaagaagctatcagctttgtgaacaaaataaagacacgttttcaaaatgatgatcat
gtgtacaaatccttcctagacattttgaacatgtataggaaggagcacaagggaatcgat
gaggtgtaccaagaggttgccgtacttttcaataaccatccagatttactagatgagttc
actaggttcttgccagatacttcaggagctgcatcagcagcacaaacttcaattggcagg
ccttcattccatcgttatgatgagaggagctcagctgttcccatgcttaggcaatcccac
atggacaagcgcttccgtcgggataggattattggtccttatgctgaaagagaccttagc
attgagaggcctgatttggacgacgacaaaacaatgatgaagttgcataaagaccaaaag
agacgtgctgaaaaagagaacagggacagaagaactcatgatcaggattataaagagcct
tataatgagaataatgaagatctaagcatgcagcatcacactgataaaaagaaatctgct
cggaaggttgaagcatttggaggacctcatgaagataaagatgccctgaaaaatatgtat
agccaagaattcagtttctgtgaaaaggtcaaggaaagactacgaagtcctactgattat
caggcattcttaaaatgtcttcacatttatagcacagaaataattacaaggaccgagtta
caaagtttggttgctgatctgcttggaaaacatcctgatcttttggaaggtttcggtgaa
tttctagagcgttgcgaacaagatgatggatttcttgaaggtgttatgaggaagagtagg
tggaatgatgggcatgcttccaagttactaaaggacgatgggaaagacaaagagcagaag
cgtgaaactgatggagctaaagaaaaggaccgattcaaggagaaatactggggaaaatcc
atccaagaacttgacctctcaaactgcaaacgctgcacgcctagctaccggcttctccct
gatgattatccaatacctacagcaagccaaaaatcagagcttggagctctggttttaaat
gatcattgggtatctgtgacttcagggagtgaggactactctttcaagcacatgcgcaga
aatcagtatgaagaaagcctgtttcgttgtgaagatgataggtttgagctagacatgtta
ttggagtcagtgagttcaactgctaagcgcgtagaagagttattgaatgccattaacgat
aattcaattggcggggcattccgtgttgaggaccactttacagtcttaaacttaagatgc
attgaacgaatctatggtgatcatggtctggatacggtggatattctgcgtaaaaacccc
tctcatgcgctgcctgttatactgacccgcttgaagcagaaacaggaggagtggaccaaa
tgtcgcacagattttaacaaagtttggtctgagatctatgctaagaaccattataagtca
cttgaccatcgaagtttctacttcaagcaacaagattcgaagactcttagctcaaaatcc
ttgctggcggagatcaaagaaattaaggagaaaaagcagaaagaagatgacacgattctt
tctatttctgctggaagtagacatcctataaccccaaatcttgagtttgattatatggac
tctgagcttcatgaagacttgtataaacttatcaagtattcgtgtgaagaagtttgctcc
tccaaagagcaactagataaagtactggggttatggaccaactttgttgagccaatcttg
ggtgttccttgtcgtcctcatgactcagaggccactgagaatgatgtcttattgaagcag
catggtccaaaagttgatggaactagcattggtgaaagtgatggcagtcctagtgccgat
gctattactaggaattctaaacactcaaaagttatcagcaacagagatgctaatgcttcc
cccctgcaagtaaattcttctaggacaagttttgcaaatgcagatgctctccccaaagaa
gatggtttggcagtgaatggtgagcacctaactagttctgatgcagctcctgctatggga
gcagatactgttcatggaagagtggaaatcacttcaggatgtggcacaagacagggtaat
ggtgcttctgacgatggtcaagtatccaagtctaacatcgataatgtgccagcatcagag
aatgatacttcaagattgattccattgggtaatggagggtttgcagaaggctctacaatt
aatgggtacaatgacgattcagctgatccctgtaaaaatgagaaagaagagggtgaatta
tcacctaatggtgattttgaagaggacaactttgttgcctttcgaagtggtgcctcgcac
aatggaagtgggcaatatcaaaccagaggtgctgaagagatcggttctcaggatgctgct
ggtgaaaatgatgcagatgctgatgatgaagatagtgaaaatgtttctgaggctgaagaa
gatgtttctggcagtgagtctgctgctgatgagtgctctcgagaagagcatgaggaagag
gacgacggagagcatgatgaacttgatggcaaagctgagagtgaaggtgaggctgagggg
acgagtgaagcacactatgctggaggtgatagcaatgtattgcaaatgtctgatcgggtt
ttgcttacttcaaagccacttacaaaatatgtggcttcacctgtatatgagggagtggtg
aagcacccgcaggtattctacggaaatgagacattctatgtgctttttaggctacagcag
attctatatgaaagattattatcagcaaagctgaattcagcatcgtctgagtcaaaatgc
agaactggaaaggatactggttctattccctatgacagattcatgagtgcgctgcatagt
ttgctcgatggttctgcagagaattcaaagttcgaggatgattgccgatcaatcattgga
aatcagtcgtatgtgctattcacggtggacaagttgatatataaactggtcaaacagctt
caaacagtctcgagtgatgagctggactgtaagctgcttcagttatatgaatatgaaaga
ttaaggaaacctgagaagtttgttgattcagcttattatgaaaatgctcatgtcctcctc
caggaggacagcatttaccggtttgaatgtacgtctttgcctacccatctgtccatccag
ttgatggatgatagagctgacaagtctgaagtagttgcagttgctgtagatcctaatttt
gcaagttatctgcacaatgattatctgtcggttaaacatgggaaaaaggagtcttcggca
gttctgctgaagagaaataagcggaaacgtgccgaccatgatgaatcaactgctttgtgc
atggcaatggaacatgttattcttgtaaatggtttggaatgcaagatggcttcaaattca
tcgaagatatcatatgtgcttgacacagaggacttctttttccgccagggtggtaaaaga
agaaaagtttcagctggtagattgtcatgtccttaccaggctagagttgaacggttccat
cgtgttctgatgtcatctttatga
DBGET
integrated database retrieval system
