KEGG   Solanum dulcamara (climbing nightshade): 129872175
Entry
129872175         CDS       T09577                                 
Name
(RefSeq) pre-mRNA-processing factor 39-2
  KO
K13217  pre-mRNA-processing factor 39
Organism
sdul  Solanum dulcamara (climbing nightshade)
Brite
KEGG Orthology (KO) [BR:sdul00001]
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03041 Spliceosome [BR:sdul03041]
    129872175
Spliceosome [BR:sdul03041]
 Other splicing related proteins
  Spliceosome associated proteins (SAPs)
   Other SAPs
    129872175
SSDB
Motif
Pfam: HAT_PRP39_N HAT_PRP39_C TPR_14 HAT_Syf1_CNRKL1_N
Other DBs
NCBI-GeneID: 129872175
NCBI-ProteinID: XP_055803036
LinkDB
Position
11:45026113..45056104
AA seq 1214 aa
MEEVYNHNAADGPHPILVHNERLKDMISGGSEDLDSWYSLITEIEKTYPDDRNAICLAFD
SFLSKFPLCHWHWKRYAYHEARLCNAEKAVEIFERAVESTPFSVGLWVDYCTFAVNSFED
PFDIRRLFTKGISLVGKDYFCHVLWDKYMSFEFSQEKWGFLTLVYVQALRFPTKKLHKYY
ENFKKLVTNLEEEILHLSDDSREVQLKELSDATVALSNKEIAQVVKDLQDPSDSSIRVKA
LYKYRYCGDQLYRKACQLKEKIKSFESNIQRRYFQAIPLDNYELKNWHDYLDFIEKQDDF
DWALKLYERCLISCANYPEFWIRYVDFMETKGGRELAIFALERATKVFSKNVPEIHLFTA
RYMEQIGDPDGARASFPPINADWDSCFIQYVTNRANMEKRLGNCSAACDIYKRAINMAVK
EQKFQCIPMLYIGYYRLRHMITSSVEAARDVIIDGIKRFPGFRLLYEELIRFAMVHEGTK
QLSIVDSIIANAISPVSDVSQDLDVKDRESISLLFLELVDLCGSISEIRKAWSRHIKLFP
QFIRTNTSSKHISTEKSALNSFTEQRRNISYVLVNQPSKGPSSGHMIQLSKREQVHLLTL
EDGNQPDQLSADPSLAVVNGNDVTGKQEQLSPEMEDLSSGNGSGKNELSFEPVVQSKDDS
STPMELSHGPSQQRREDLPGPMDFSYDSIPQPGEDVSKSPGPVLDFKKPPRPFSVLEASQ
EHPSSEIINRDQDVELEQPPMPVSLEYLSLVSGETESQDFVAMHSDDLESGEEIPSSSTG
KPQDPVNDGNGPVSCSSPAVTAESSQLNDTVAVPEGNSSKVPNQPAGYDQQPQRAASQEL
RLCDSQGDSQIQQVLDKATVQCQSGTSQGNIPSNQCWTLNNMPQPISMSGNHPQASSSPV
SYSQPSIAQHSVNNSQQIGLNPHHEALNKKSRHISLSENHAQMSSSHASFSQPSTPQHSG
QSRQQIGPLHHQEALNQTSQHHYQQQHLLHGQYQQNQLQMQQPYTSIQQQQMHPHPSQQL
YQQQQLIQQQSQQQTPLPQQQQYFQQIHSSQYQQQQYLLHQLQYLPQVHQLWQQQFQQQA
QQMQPQEGQQTQQHFLQTQEQLEQYRQSQELAYQMQQHGYQLLLHQYQVHQQGYQSMQQQ
QQWQQQGHLQLQQYSHLQQQQCHHLEQQTDEDYNQTHQGQQVVEPHSSGTPAPASAHESE
SPETARQPHSAEKS
NT seq 3645 nt   +upstreamnt  +downstreamnt
atggaggaggtgtacaatcacaatgctgctgacggacctcatcccattctagttcataat
gaaagacttaaggatatgatttctggaggctcagaagaccttgattcctggtactcactg
ataacagagattgaaaaaacctaccctgatgataggaatgcgatttgtttggcttttgac
tcctttttgtctaagtttccactatgccactggcattggaaaagatatgcttatcatgag
gcacggctgtgtaatgctgaaaaagctgttgaaatctttgagcgagctgtggaatcaaca
ccattttctgttggtctgtgggttgactattgtacctttgctgtgaattcgttcgaggat
ccatttgatattcgtaggttgtttaccaaaggaatctcccttgttgggaaggactacttc
tgtcatgtcttatgggacaagtacatgtcctttgagttctctcaggagaagtggggcttc
cttactctagtttatgtacaggctctacgcttccccactaagaagttgcataagtactat
gagaactttaagaagcttgtaaccaatttagaagaggagattctacatctcagtgatgac
agccgtgaagtacaactaaaggaattatccgatgcaacagttgcgttatcaaataaagaa
attgctcaagttgttaaggacctccaggatcctagtgacagttcaatcagagtgaaagca
ctgtataagtacagatactgtggagatcagctataccggaaagcgtgtcaactaaaggaa
aaaattaaaagttttgaatcaaacatccagaggcgatatttccaggcaattcctcttgac
aactatgagctgaagaactggcatgattatctcgacttcatcgaaaagcaagatgatttt
gattgggccctaaaactgtatgagaggtgcttgatatcctgtgccaactaccctgagttc
tggatacgttatgttgattttatggagactaagggaggacgagagctagcgatttttgct
ttagaacgagcaacaaaagttttctcaaagaatgttccagaaatccatctttttactgct
agatatatggagcaaattggagatccagatggtgctcgtgcttcctttcctcctattaat
gcagattgggactcctgtttcattcaatatgttactaatcgagcaaatatggaaaaacgt
ctgggaaattgctcagctgcttgtgatatttacaaaagagcaattaatatggcagtaaag
gagcagaaattccaatgcattcctatgctatacattggttattatcgtcttcgacacatg
atcacttctagtgtggaggctgcaagagatgtaataattgatggaataaagcgtttccct
ggttttagacttctttatgaggaattgataagatttgcaatggtgcatgaaggaactaag
caattgagcattgtagactctatcatagctaatgcaatctctcctgtgtcagacgtatcc
caagatttggatgtaaaagatcgagagagtatatccttattatttttggagttagttgat
ctttgtggttctatctctgagataagaaaggcatggagtcgtcacatcaaattgtttcct
cagttcataagaaccaatacctcatctaaacacataagtactgagaagagtgcactgaac
agctttactgagcaaaggagaaacatttcctatgtcttagttaatcagccatcaaaagga
ccgagttctggccatatgatccagctgtccaaacgagagcaggtgcatttactgacactt
gaagatgggaatcaaccagatcagctttctgcagacccgtctttagctgtggtcaatggc
aatgatgtgactggtaaacaagaacagctatctccagaaatggaagatctatccagtgga
aatggctctggaaaaaatgagttgtcatttgagcctgtggttcaatcaaaggatgattca
tctacgccgatggaattaagtcatggtccatcacagcagaggagagaagatttgcctgga
ccaatggacttctcttatgattccataccccaacctggagaagatgtatccaagtctcct
gggcctgtactggactttaaaaaaccaccaaggcccttttctgttttagaagcctcacaa
gaacatccaagttcagaaattatcaatcgagatcaggatgttgaacttgaacagccacca
atgccggtttccttggagtatctttccttggtttctggggaaacggaatcccaggacttt
gttgccatgcattctgatgatcttgaaagtggtgaagaaattccttcatcaagcacgggc
aaaccacaagatcctgtaaatgatggaaatggaccagttagttgttcatctccagctgtt
actgctgaaagttcacagctaaatgatacagtcgcagttcctgagggaaatagttcaaag
gtgcccaatcaacctgcaggatatgatcagcagccacaacgagctgcttcacaagaactg
cgcctgtgtgattctcagggtgattcacagatccaacaggtcctggataaggctactgtg
cagtgtcaatcaggtacatctcaggggaatatcccgagtaaccaatgctggacattgaat
aatatgccacagccgatctccatgtctggaaaccatccccaggcgtcttcctcacctgtt
tcttattctcaaccaagtatagctcaacattctgtgaacaatagccagcaaattgggctg
aatccccatcacgaagcattgaataaaaaatcacgacacatctctctatcagaaaaccac
gctcaaatgtcttcctcacatgcttcattttctcaaccaagtacacctcaacattctggg
cagagtaggcagcaaattgggcccttacaccaccaggaagcactgaatcaaacatcgcaa
caccattaccagcagcagcatcttttgcacggccagtatcagcaaaatcagctgcaaatg
caacagccctacactagtatacaacagcaacagatgcatccacatccaagtcaacagctg
tatcagcagcagcagcttattcagcaacagagtcagcagcaaacacctctaccgcaacag
caacagtatttccagcaaattcattcttcacaatatcaacaacagcaatatcttctgcac
cagctacaatatttaccacaggtacaccaactatggcaacagcagtttcaacagcaagca
caacagatgcaaccacaggaaggccagcaaacgcagcaacactttctgcaaacacaggag
cagctggagcaatatcgtcagtcccaagaacttgcataccagatgcaacaacatggttat
caactactcttgcaccagtaccaagtacatcaacaaggatatcagagtatgcaacaacaa
caacaatggcaacaacagggacatctccaattacagcagtactctcacctacaacagcag
caatgtcatcatctggagcagcaaacagatgaggattacaatcaaactcatcagggtcaa
caggttgtggagccacattcttcaggaactcctgctcctgcttctgctcatgaatcagaa
tcaccagaaactgcaaggcaaccacattctgcagaaaaatcttga

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