Solanum dulcamara (climbing nightshade): 129872175
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Entry
129872175 CDS
T09577
Name
(RefSeq) pre-mRNA-processing factor 39-2
KO
K13217
pre-mRNA-processing factor 39
Organism
sdul
Solanum dulcamara (climbing nightshade)
Brite
KEGG Orthology (KO) [BR:
sdul00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
sdul03041
]
129872175
Spliceosome [BR:
sdul03041
]
Other splicing related proteins
Spliceosome associated proteins (SAPs)
Other SAPs
129872175
BRITE hierarchy
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Ortholog
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Gene cluster
GFIT
Motif
Pfam:
HAT_PRP39_N
HAT_PRP39_C
TPR_14
HAT_Syf1_CNRKL1_N
Motif
Other DBs
NCBI-GeneID:
129872175
NCBI-ProteinID:
XP_055803036
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All DBs
Position
11:45026113..45056104
Genome browser
AA seq
1214 aa
AA seq
DB search
MEEVYNHNAADGPHPILVHNERLKDMISGGSEDLDSWYSLITEIEKTYPDDRNAICLAFD
SFLSKFPLCHWHWKRYAYHEARLCNAEKAVEIFERAVESTPFSVGLWVDYCTFAVNSFED
PFDIRRLFTKGISLVGKDYFCHVLWDKYMSFEFSQEKWGFLTLVYVQALRFPTKKLHKYY
ENFKKLVTNLEEEILHLSDDSREVQLKELSDATVALSNKEIAQVVKDLQDPSDSSIRVKA
LYKYRYCGDQLYRKACQLKEKIKSFESNIQRRYFQAIPLDNYELKNWHDYLDFIEKQDDF
DWALKLYERCLISCANYPEFWIRYVDFMETKGGRELAIFALERATKVFSKNVPEIHLFTA
RYMEQIGDPDGARASFPPINADWDSCFIQYVTNRANMEKRLGNCSAACDIYKRAINMAVK
EQKFQCIPMLYIGYYRLRHMITSSVEAARDVIIDGIKRFPGFRLLYEELIRFAMVHEGTK
QLSIVDSIIANAISPVSDVSQDLDVKDRESISLLFLELVDLCGSISEIRKAWSRHIKLFP
QFIRTNTSSKHISTEKSALNSFTEQRRNISYVLVNQPSKGPSSGHMIQLSKREQVHLLTL
EDGNQPDQLSADPSLAVVNGNDVTGKQEQLSPEMEDLSSGNGSGKNELSFEPVVQSKDDS
STPMELSHGPSQQRREDLPGPMDFSYDSIPQPGEDVSKSPGPVLDFKKPPRPFSVLEASQ
EHPSSEIINRDQDVELEQPPMPVSLEYLSLVSGETESQDFVAMHSDDLESGEEIPSSSTG
KPQDPVNDGNGPVSCSSPAVTAESSQLNDTVAVPEGNSSKVPNQPAGYDQQPQRAASQEL
RLCDSQGDSQIQQVLDKATVQCQSGTSQGNIPSNQCWTLNNMPQPISMSGNHPQASSSPV
SYSQPSIAQHSVNNSQQIGLNPHHEALNKKSRHISLSENHAQMSSSHASFSQPSTPQHSG
QSRQQIGPLHHQEALNQTSQHHYQQQHLLHGQYQQNQLQMQQPYTSIQQQQMHPHPSQQL
YQQQQLIQQQSQQQTPLPQQQQYFQQIHSSQYQQQQYLLHQLQYLPQVHQLWQQQFQQQA
QQMQPQEGQQTQQHFLQTQEQLEQYRQSQELAYQMQQHGYQLLLHQYQVHQQGYQSMQQQ
QQWQQQGHLQLQQYSHLQQQQCHHLEQQTDEDYNQTHQGQQVVEPHSSGTPAPASAHESE
SPETARQPHSAEKS
NT seq
3645 nt
NT seq
+upstream
nt +downstream
nt
atggaggaggtgtacaatcacaatgctgctgacggacctcatcccattctagttcataat
gaaagacttaaggatatgatttctggaggctcagaagaccttgattcctggtactcactg
ataacagagattgaaaaaacctaccctgatgataggaatgcgatttgtttggcttttgac
tcctttttgtctaagtttccactatgccactggcattggaaaagatatgcttatcatgag
gcacggctgtgtaatgctgaaaaagctgttgaaatctttgagcgagctgtggaatcaaca
ccattttctgttggtctgtgggttgactattgtacctttgctgtgaattcgttcgaggat
ccatttgatattcgtaggttgtttaccaaaggaatctcccttgttgggaaggactacttc
tgtcatgtcttatgggacaagtacatgtcctttgagttctctcaggagaagtggggcttc
cttactctagtttatgtacaggctctacgcttccccactaagaagttgcataagtactat
gagaactttaagaagcttgtaaccaatttagaagaggagattctacatctcagtgatgac
agccgtgaagtacaactaaaggaattatccgatgcaacagttgcgttatcaaataaagaa
attgctcaagttgttaaggacctccaggatcctagtgacagttcaatcagagtgaaagca
ctgtataagtacagatactgtggagatcagctataccggaaagcgtgtcaactaaaggaa
aaaattaaaagttttgaatcaaacatccagaggcgatatttccaggcaattcctcttgac
aactatgagctgaagaactggcatgattatctcgacttcatcgaaaagcaagatgatttt
gattgggccctaaaactgtatgagaggtgcttgatatcctgtgccaactaccctgagttc
tggatacgttatgttgattttatggagactaagggaggacgagagctagcgatttttgct
ttagaacgagcaacaaaagttttctcaaagaatgttccagaaatccatctttttactgct
agatatatggagcaaattggagatccagatggtgctcgtgcttcctttcctcctattaat
gcagattgggactcctgtttcattcaatatgttactaatcgagcaaatatggaaaaacgt
ctgggaaattgctcagctgcttgtgatatttacaaaagagcaattaatatggcagtaaag
gagcagaaattccaatgcattcctatgctatacattggttattatcgtcttcgacacatg
atcacttctagtgtggaggctgcaagagatgtaataattgatggaataaagcgtttccct
ggttttagacttctttatgaggaattgataagatttgcaatggtgcatgaaggaactaag
caattgagcattgtagactctatcatagctaatgcaatctctcctgtgtcagacgtatcc
caagatttggatgtaaaagatcgagagagtatatccttattatttttggagttagttgat
ctttgtggttctatctctgagataagaaaggcatggagtcgtcacatcaaattgtttcct
cagttcataagaaccaatacctcatctaaacacataagtactgagaagagtgcactgaac
agctttactgagcaaaggagaaacatttcctatgtcttagttaatcagccatcaaaagga
ccgagttctggccatatgatccagctgtccaaacgagagcaggtgcatttactgacactt
gaagatgggaatcaaccagatcagctttctgcagacccgtctttagctgtggtcaatggc
aatgatgtgactggtaaacaagaacagctatctccagaaatggaagatctatccagtgga
aatggctctggaaaaaatgagttgtcatttgagcctgtggttcaatcaaaggatgattca
tctacgccgatggaattaagtcatggtccatcacagcagaggagagaagatttgcctgga
ccaatggacttctcttatgattccataccccaacctggagaagatgtatccaagtctcct
gggcctgtactggactttaaaaaaccaccaaggcccttttctgttttagaagcctcacaa
gaacatccaagttcagaaattatcaatcgagatcaggatgttgaacttgaacagccacca
atgccggtttccttggagtatctttccttggtttctggggaaacggaatcccaggacttt
gttgccatgcattctgatgatcttgaaagtggtgaagaaattccttcatcaagcacgggc
aaaccacaagatcctgtaaatgatggaaatggaccagttagttgttcatctccagctgtt
actgctgaaagttcacagctaaatgatacagtcgcagttcctgagggaaatagttcaaag
gtgcccaatcaacctgcaggatatgatcagcagccacaacgagctgcttcacaagaactg
cgcctgtgtgattctcagggtgattcacagatccaacaggtcctggataaggctactgtg
cagtgtcaatcaggtacatctcaggggaatatcccgagtaaccaatgctggacattgaat
aatatgccacagccgatctccatgtctggaaaccatccccaggcgtcttcctcacctgtt
tcttattctcaaccaagtatagctcaacattctgtgaacaatagccagcaaattgggctg
aatccccatcacgaagcattgaataaaaaatcacgacacatctctctatcagaaaaccac
gctcaaatgtcttcctcacatgcttcattttctcaaccaagtacacctcaacattctggg
cagagtaggcagcaaattgggcccttacaccaccaggaagcactgaatcaaacatcgcaa
caccattaccagcagcagcatcttttgcacggccagtatcagcaaaatcagctgcaaatg
caacagccctacactagtatacaacagcaacagatgcatccacatccaagtcaacagctg
tatcagcagcagcagcttattcagcaacagagtcagcagcaaacacctctaccgcaacag
caacagtatttccagcaaattcattcttcacaatatcaacaacagcaatatcttctgcac
cagctacaatatttaccacaggtacaccaactatggcaacagcagtttcaacagcaagca
caacagatgcaaccacaggaaggccagcaaacgcagcaacactttctgcaaacacaggag
cagctggagcaatatcgtcagtcccaagaacttgcataccagatgcaacaacatggttat
caactactcttgcaccagtaccaagtacatcaacaaggatatcagagtatgcaacaacaa
caacaatggcaacaacagggacatctccaattacagcagtactctcacctacaacagcag
caatgtcatcatctggagcagcaaacagatgaggattacaatcaaactcatcagggtcaa
caggttgtggagccacattcttcaggaactcctgctcctgcttctgctcatgaatcagaa
tcaccagaaactgcaaggcaaccacattctgcagaaaaatcttga
DBGET
integrated database retrieval system