Solanum dulcamara (climbing nightshade): 129872209
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Entry
129872209 CDS
T09577
Name
(RefSeq) vacuolar protein sorting-associated protein 54, chloroplastic-like isoform X1
KO
K17600
vacuolar protein sorting-associated protein 54
Organism
sdul
Solanum dulcamara (climbing nightshade)
Brite
KEGG Orthology (KO) [BR:
sdul00001
]
09180 Brite Hierarchies
09181 Protein families: metabolism
01009 Protein phosphatases and associated proteins [BR:
sdul01009
]
129872209
09182 Protein families: genetic information processing
04131 Membrane trafficking [BR:
sdul04131
]
129872209
Protein phosphatases and associated proteins [BR:
sdul01009
]
Protein serine/threonine phosphatases
Phosphoprotein phosphatases (PPPs)
Protein phosphatase-1
PP1-interacting proteins (PIPs)
129872209
Membrane trafficking [BR:
sdul04131
]
Endosome - Golgi transport
Tethering complex
GARP complex
129872209
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Vps54
Vps54_N
Motif
Other DBs
NCBI-GeneID:
129872209
NCBI-ProteinID:
XP_055803078
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All DBs
Position
11:23783462..23814105
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AA seq
1006 aa
AA seq
DB search
MDSKPSSSSGRYENSNKKPYLSKSVSDANTHNQSLASILNNPHAGKSDGWWWPSNSSSLP
VVPEFTPLNPLPKPGSDITRTDFLPYITSFSDPFTRFHDIQKHSKFSLLDDQNGENALVA
CLREVPALYFKEDFQLKDGATFKAACPFRTTAENSVMQEKLSQYLDVVELHLVREISLRS
RSFFEAQGKLEDLNSKIVEGCKRIRELKETIRLLDNNLVGPARKLEELNVKRNDLVALQN
KLNLLIYVNQALSTLNLLVASADCAGALDVTDDLQHLLDGDELAGLHCFRHLRDDLAASI
DSINSILSAEFLRITIQETGNMDAAITSKFKARATVAINGEGHEVKLDEEETSNFRDRLL
PFVIGLLRTAKLPAVLRIYRDTLTADMKTAIKTAVEELLRVLVAQPSDSDFVAGERVVDT
DGGSSSLASRLRSLAPESFVQLLKAIFMIVQAHLVQASEVKKTIEWIICHLDDHYAADSV
AAAIALGAAAAETASEGDGQTFSQFSPSSNFSRVFSIQEKRNDATTMSNLSRNFRADILR
ENTEAVFAACDAAHGRWAKILGVRAPIHSKLRLQEFLNIYNITQEFITATEKIGGRLGYS
IRGTIQSQAKAFIDFQHESRMAKLKAILDQENWAEIDFPDEFQTIVTSLFSSKSGTSGHA
DDDSADTATSKTEVVRKSSDPSMVDAGVPNLSHNTEQTDATSTHPDNTAQSNDTKSRERG
RSSPRMLSFGGVAYHMVNCGLILVKMLSEYIDINNSLTGLSSEIVHRVVDMLKFFNTRTC
QLVLGAGAMQVSGLKSITSKHLALTSQVIGFTYTIIPEIKRILFLRVPETHKGLLMLEVD
RVAQDYKVHRDEIHSKLVQIMRERLLVHLRSLPQIVESWNRQEDTDSQPSQFARSITKEV
GLLQRVLCRTLHEVDVQAIFRSAFSLFTLASKKDFRQVVIIFHSQISEAFSRLDISSQHA
RQRVYRDVQHLLGCIRSLPSDSKSNPPNWGHLDEFLEQNFGAEACQ
NT seq
3021 nt
NT seq
+upstream
nt +downstream
nt
atggattcaaagccttcctcatcatctggaaggtacgaaaacagcaataaaaaaccatat
ttgtcgaaatcagtatctgatgctaatacccacaaccaaagcttagcatcaattcttaac
aacccacacgctggaaaatcagatggatggtggtggccatcaaattcctcatcccttccc
gtcgttcctgaattcaccccactaaacccacttccaaaacccggatctgatataaccaga
accgattttctcccttacataacatccttttccgacccttttacccgttttcacgatatc
caaaagcacagtaaattcagcctcctcgacgatcaaaatggtgaaaatgcccttgtcgca
tgtcttcgcgaagtgcccgctttgtacttcaaagaagattttcagttaaaggatggtgcc
acgtttaaagctgcttgtccatttaggactacggctgagaattcggttatgcaagaaaag
ttgtcacagtatttggatgtagtggaactgcacttagtgagggagatttcgttgcgttca
cgctcgttttttgaggcgcaagggaaactggaggatctgaattcaaagatagttgaaggg
tgtaagaggatcagggaactgaaagagacaataaggctactggataataatttggtgggg
cctgcaagaaagttggaggagttgaatgtaaagaggaatgatttggttgctcttcagaac
aagctgaacctccttatatacgttaatcaagctttatcaactctcaatttgctagttgca
tctgcagattgtgctggagctttagatgttacagatgacttgcaacatttattggatgga
gatgaattggcaggtctacattgctttcgacaccttcgtgatgatttagctgcttcaatc
gattctatcaacagcattctttcagcagaatttttgcgtataaccatacaagaaactggc
aacatggatgcggcaattacatcaaaatttaaagcacgggcgaccgttgcaattaatgga
gaaggccatgaagttaaattggatgaagaagaaacctcaaattttcgtgaccggcttctt
ccatttgttattggattacttagaactgcaaaactccctgctgtgttgagaatatatcgt
gacactcttacagctgacatgaaaactgccattaaaacagcagttgaagagctgcttcgt
gttcttgttgcccaaccttcagattcagattttgttgcaggagagcgagtagttgataca
gatggtgggagctcatctcttgccagtagattgagaagcctggcaccagaaagttttgtt
caacttttgaaggctatttttatgatagtgcaggcgcacttagtccaggcttctgaagtt
aaaaaaacaattgagtggattatctgccatcttgatgatcattatgctgcggactcagta
gctgctgcaatagcacttggggcagcagctgcagaaactgctagtgaaggtgacggtcaa
accttttcacaattttctccctcaagcaacttttccagggttttctcaatccaggagaag
agaaatgatgcaacaaccatgtcaaatttatcgagaaacttcagagctgatatattgaga
gagaatacagaagctgtatttgcagcttgtgatgctgcacatggaagatgggcaaagatc
cttggagtccgtgctcctattcactctaagttgaggttgcaggagttcctaaacatatat
aacatcactcaggaatttattactgccactgagaaaattggtggaaggctggggtatagt
atccgtggaaccatacaatcacaggccaaggcctttattgatttccaacatgaatctcga
atggcaaaattgaaggctatacttgaccaggaaaattgggctgagattgatttccccgac
gagttccagactatcgtcacatcactattttcttccaagtcagggaccagtggacatgct
gatgatgattctgctgacactgcaacaagcaagactgaagtggttcgaaaaagcagtgat
ccttcaatggtggatgctggagtcccaaatctatcacataatacagagcagactgatgct
acttcaacacatccagataatacagcacagagtaatgacacgaaatcaagagaacgcgga
agatcatctcccagaatgctttcctttgggggtgttgcgtatcacatggtaaactgtggc
ttgattttggtgaagatgttatcagaatatattgacataaataatagtttaactggccta
tcatcagaaatagttcaccgggttgttgacatgttgaagtttttcaatacgagaacttgt
caacttgtacttggagctggagccatgcaggtttcaggtttgaagtctattacttccaag
cacttggctttgacaagccaagtcatcggtttcacatatactataattccagaaatcaag
agaatactgtttctgagagtgcctgagacacacaagggattgctaatgctggaggttgat
cgagtagcacaggactacaaagttcatcgtgatgaaatacattcgaagttggttcagata
atgcgagaaagattgctggtacaccttcggagtttgccacaaattgttgagagttggaat
aggcaggaagatactgactcacagccaagtcagtttgctcgttcaatcacaaaggaggtt
ggccttctccaacgtgtgttatgtcgtactctgcatgaggtagatgttcaagctattttc
agaagtgctttctctctcttcactcttgcttccaaaaaggactttaggcaagtggttatc
atctttcactcacaaatttcggaggcattttcacgattggatattagcagtcaacacgct
agacaaagagtgtatcgtgatgttcagcatcttcttggatgtatcagatcattaccttct
gatagtaaatccaatcctcccaattgggggcatcttgatgagtttctggaacaaaatttt
ggtgcagaagcttgtcaatag
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