Solanum dulcamara (climbing nightshade): 129872220
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Entry
129872220 CDS
T09577
Name
(RefSeq) DNA mismatch repair protein MLH3-like isoform X1
KO
K08739
DNA mismatch repair protein MLH3
Organism
sdul
Solanum dulcamara (climbing nightshade)
Pathway
sdul03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
sdul00001
]
09120 Genetic Information Processing
09124 Replication and repair
03430 Mismatch repair
129872220
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
sdul03400
]
129872220
DNA repair and recombination proteins [BR:
sdul03400
]
Eukaryotic type
SSBR (single strand breaks repair)
MMR (mismatch excision repair)
MutL homologs
129872220
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
MutL_C
DNA_mis_repair
HATPase_c_3
HATPase_c
Motif
Other DBs
NCBI-GeneID:
129872220
NCBI-ProteinID:
XP_055803096
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All DBs
Position
11:52175727..52187492
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AA seq
1232 aa
AA seq
DB search
MKTPEPQICYLLKEMGNIKRIPEAIWSSIRSGVILYDFTRVVEELVFNSLDAGATKVSVA
IGIGTCYVKVDDNGSGVSRDGLVLMGEKYATSKYSHSDDMHAFPASFGFKGEALSSISDV
SLLEIITKTHGRPNGYRKVLKDGKCLYVGIDDCRQDVGTTVIVRDVFYNQPVRRKQMHSN
PKKVLHSLKEALLRIAIVHPYVSFKIVDIESEDDLLCTRASPSPLPLLSSEFGIHLSSLN
KLNASDGSFKLSGYILGPDVYTVKVLQYFYINSRFVSKGPIHKLLNNIAMSFESASNIEK
HNRSQIYPLFLLNLNCPRSLYDLTLEPSKTSVEFKDWRPVLLFIEDTVTNLWTESNSAEI
PVNCEIRKKRCRAQSCKATLELPSPLPKKLTGECTVKRDIQFSQNSLWGSASEKHDPGSR
FLCQIESSNRSIDGSLAHCTAGVNWKSRSSVQPFSSNVLPTEDDFLDNKFNASASSNYNS
DCLLGSGWEDDSQTIVAGKSTEDASFREFLGLDDSSNVMHESRKPFMRSCSLHRSLIHNE
TSFDNDEDIKFEKSDYRAKQNRLEDDYSVKFEVVDDVNQVLNQRSPRGKEIYLENFSWCK
TQSKALQRSKVLSGDSEKSSLTKDILDENDHLIDFFKQSENYGSGLPSFSPEPSPLPPDP
FPRTSLQDVNPYIAENGIETSVKHEAGVTYDFGNMEHNLLVPAINNIGKEDCLFPHPAKF
DLDFYACSKEDLGSIGGLVPWDVYSSGLSEFYYDRDDLSHIHSHGEENLTNYLTPRAMLS
SRVDGNLHKWLDAGNRGKTDEPIRKKKNRRSHSSPPFYQGKKKFFATSESSRTAAGNNII
ETVHDVPLMPETRAVSRLQHSSEAICSELPQQSSHQCDQSSTPIFGDGVFSDERLSVKMK
LVNIWNSKSQTQGVCTSTRDGESKEEFAPTKTQNILDSGTKWRDFCPEITSGSGTESLKN
QDTILNVTSGILYFVGDSLVPDTIDKNCLEGAKVLQQVDKKFIPIVGGTTLAIIDQHAAD
ERIRLEELREKVLSGQKRTTTYLDSEQELVMPEIGYQLLHNYADQIQNWGWICNIHSQAS
RSFTSRNLNLIHKQPTSVTLLAVPCILGVNLTDVDLLEFLQQLADTDGSSIVPPSVNRVL
NNKACRSAIMFGDALLPSECSLIVEELKQTSLCFQCAHGRPTTVPLVNMGALHEQIAKLG
SWSRGSPEAWHGLHRHEINLERAAKRLRSAIS
NT seq
3699 nt
NT seq
+upstream
nt +downstream
nt
atgaaaacccctgaaccccaaatctgttatctgctcaaggagatggggaacattaagcga
atacctgaggctatttggagctcaattcggtcaggggttatcttgtatgatttcacaagg
gttgttgaggagttggttttcaacagcctcgatgctggtgccaccaaggtatctgttgct
ataggcattgggacctgctatgttaaggtggatgacaatggatctggtgtttcacgagat
ggactggtgctgatgggagaaaaatatgcgacatcaaaatacagccattcagatgatatg
catgctttcccagcaagctttggtttcaaaggagaggctctgagctctatttctgacgtt
tctttgttggaaattattactaaaactcacggcaggccaaacggatatcgtaaggttttg
aaggatggcaagtgtttgtacgttggaattgatgattgtagacaagatgttggtacaaca
gtcattgttcgtgatgtattttacaaccaaccagttcgaaggaagcaaatgcactccaac
ccaaagaaggtcttgcattctctgaaagaggctctgctaagaattgccattgtgcatcct
tatgtctccttcaaaattgttgatattgaaagtgaggatgacttgctttgcacacgtgct
tctccttctccgttgccgctattgtccagtgagtttgggattcatctgagttcccttaac
aaattgaatgcaagtgatggttcattcaagctctcaggatacattttaggtcctgatgtt
tacacagtgaaggtccttcaatatttctatatcaattcaagatttgtttccaaaggacca
atacataaattacttaataacatagctatgagttttgaaagtgcttctaacattgagaag
cacaatagatctcagatatatccactgtttttgttgaacctaaactgtcctagatcatta
tatgatttgacattggagccttcaaagacctctgtggaatttaaggattggcgccccgtc
cttctctttattgaggatactgtcaccaatctctggactgaaagtaactctgccgaaata
cctgtgaattgtgagatcaggaaaaagaggtgcagggctcagagttgcaaagctacactt
gaacttccttccccactgccaaagaaactgactggagagtgcactgtcaagagagatatt
caattttcacagaactctctgtggggaagtgcttctgaaaagcatgatcctgggtccaga
ttcctctgtcagattgaaagttcaaatcgatcaattgatggatctcttgctcattgcaca
gccggtgtaaactggaaatccagaagctctgtgcaacccttttcatctaatgttttacct
acagaagatgatttcctggataacaaattcaatgcttcagctagctccaattataattca
gactgcctattaggttcaggatgggaggatgattctcaaacaattgtagctggcaaatca
acagaggatgcttcatttagggagtttcttggacttgatgacagttcaaatgtgatgcat
gagagtaggaaaccatttatgcggagctgttctttgcacagaagcttgatacataatgaa
acatcttttgataatgatgaagatattaagtttgaaaaaagtgattacagagctaaacaa
aatcgccttgaagatgattatagtgttaaatttgaagtagttgatgatgttaaccaggtc
ttaaatcaaaggtctcctagaggcaaggaaatatatcttgagaacttctcctggtgcaaa
actcagagtaaggcattgcagaggtcaaaagttttgtcaggagattcagaaaaatcctca
ttaaccaaggacattctagatgaaaacgatcatcttatagacttttttaaacaaagtgaa
aattatggttccggcctaccatctttcagtccagaaccgtctcctctgccaccagatcct
tttcccaggaccagtttacaagatgttaatccttacatcgctgaaaatgggattgaaact
tctgttaaacatgaagctggtgtcacgtatgattttggaaacatggaacataatcttttg
gttcctgccataaataatatcggaaaagaggactgcttgttcccacatcctgcaaagttt
gatctcgatttttatgcttgttctaaagaggatttgggcagtataggtggacttgttccg
tgggacgtttatagttcaggtctttctgaattctattatgacagagatgatttgtcacat
atacattctcatggtgaagaaaatcttactaattatttgacaccacgagctatgctctcc
tctagggtggatgggaacttgcataaatggcttgatgctggaaatcgaggtaaaacagat
gagcctataaggaagaagaagaatagaagaagtcattcatctcctccattttaccaaggc
aagaagaagttctttgccacgagtgagtcttcaagaacggcagcaggaaataacattatt
gaaactgttcatgatgtgccactcatgccagaaactagagctgtaagcagactgcagcat
tcttcagaagctatctgctcagagcttccacagcagtcatcccatcaatgtgatcaatct
tccaccccaatttttggtgatggtgtattctctgatgaaaggctaagtgttaaaatgaaa
cttgttaacatctggaatagcaaatcgcaaactcaaggggtgtgcacaagtacacgtgat
ggggagtcaaaagaagaatttgcaccaacaaaaactcaaaatattctagattctgggaca
aaatggagggacttctgtccagagattacaagcggtagtggaacagagagtcttaagaat
caggatactatactcaatgtcacttctggcatcttgtattttgttggtgattcattggtt
cctgataccattgataaaaactgcctggagggtgccaaagttctccaacaggttgataaa
aagtttattccaattgtgggcggcacaacacttgctataattgatcagcatgctgcagat
gagcgaattcgtttggaagaactgcgtgagaaggtcttatctggacaaaagaggacaaca
acatatcttgattccgagcaagaattggtcatgcctgaaattggttaccaattattacac
aactatgctgaccaaattcaaaactggggttggatctgcaatattcattctcaagcctca
agatcatttactagcaggaacctaaatctgattcacaagcagccaacatctgtcacactt
cttgcggttccgtgtattttgggcgttaatctaactgatgtggatttgttagaatttctt
cagcagcttgctgatacagatggatcatcaatagtacccccatcagtgaatcgagtcctg
aataacaaggcttgcaggagtgcaattatgtttggagatgcattgttgccttcagaatgt
tctctcattgttgaggagttgaagcaaacttcgttgtgttttcaatgtgctcatgggcga
ccgactactgtccctcttgtcaacatgggtgctctgcatgaacagattgctaagttaggt
tcgtggagtaggggttcccccgaggcatggcatggattacatcggcatgaaatcaaccta
gagcgtgcagcaaagcgactaagatcagccatatcctag
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