Solanum dulcamara (climbing nightshade): 129872372
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Entry
129872372 CDS
T09577
Name
(RefSeq) protein TRANSPORT INHIBITOR RESPONSE 1-like
KO
K14485
transport inhibitor response 1
Organism
sdul
Solanum dulcamara (climbing nightshade)
Pathway
sdul04075
Plant hormone signal transduction
Brite
KEGG Orthology (KO) [BR:
sdul00001
]
09130 Environmental Information Processing
09132 Signal transduction
04075 Plant hormone signal transduction
129872372
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04121 Ubiquitin system [BR:
sdul04121
]
129872372
Ubiquitin system [BR:
sdul04121
]
Ubiquitin ligases (E3)
Multi subunit type E3
SCF complex
Target recognizing subunit (F-box)
129872372
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GFIT
Motif
Pfam:
Transp_inhibit
F-box_5
LRR_At5g56370
LRR_4
F-box-like
DUF7885
LRR_6
F-box
Motif
Other DBs
NCBI-GeneID:
129872372
NCBI-ProteinID:
XP_055803331
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Position
11:48939734..48944889
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AA seq
584 aa
AA seq
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MNPSLKKPRESVDLSELTQSAFPDEVLEKVLSLVQSHKDRNSASLVCKDWYNAERWTRTK
LFIGNCYSVTPEIVARRFPKIKSVTLKGKPRFSDFNLVPENWGADIQAWLDVFAKVYPFL
EELRLKRMAVSDESLEFLAKSFHGFKVLSLLSCDGFSTDGISSIAAHCKSLTELDIQENG
MDDISGSWLSCFPDDFTSLEVLNFASMNTEISKDALERLVSRCKSLRVLKVNKNITLPQL
QRLLVRAPQLMELGTGCFLPEQLTSRQYAELENAFSNCKHLHTISGLWEATHRYLPALYA
ACASLTFLNLSYETIRSGEFSKLLAHCPNLRRLWVLDTVKDKGLEAVGTSCPLLEELRVF
PADPFDEDLDHGVTESGFVAVSAGCPKLQYVLYFCRQMTNAAVATIVRNCPDFTHFRLCI
MNPGQPDYVTNEPMDEAFGAVVKTCTKLRRLSVSGLLTDLTFEYIGKYAKNLETLSVAFA
GSSDWGMQCVLEGCSKLRKLEIRDCPFGNAALLSGLEKYESMRCLWMSACSVTMNGCRLL
AAKRPRLNVEVIKDENSDDYADKLYVYRSVAGPRRDAPPFVVTL
NT seq
1755 nt
NT seq
+upstream
nt +downstream
nt
atgaatcctagcttgaaaaaaccgagggagtccgtagatttatcggagttaactcagtca
gcatttccagatgaggtattggagaaggttctatctcttgtgcaatcccacaaagacaga
aattcagcttcattggtctgcaaggattggtataatgcagagcgttggacaagaactaag
ctgtttattgggaattgctattcagtcactcctgagattgtagcaaggagatttcccaag
attaagagtgttactcttaaagggaaaccaagattttctgactttaatttggtaccagag
aactggggtgctgatattcaggcttggcttgatgtttttgccaaagtttacccctttctt
gaggagttgagattgaaaagaatggctgttagtgatgagagtttggagtttttggcaaaa
tcatttcatggatttaaggttctctcattgttgagttgtgatggttttagcactgatggg
atcagtagcattgctgctcactgcaagagcttgacagagctggacattcaggaaaatggc
atggatgatatttctggcagttggctaagttgttttccggatgactttacatcactggag
gtgcttaactttgccagtatgaacactgagatcagtaaagatgctttagagagacttgtt
agtaggtgcaaatcactgagggtactgaaggtgaataagaacatcaccttgcctcagttg
caacgcctgctcgttcgggctcctcagctgatggagctgggtacagggtgttttcttcca
gagcaactcacgagtcggcagtatgcagaacttgaaaatgcattcagcaactgcaaacat
ctgcacactatttcaggtttatgggaagcaactcatcgatatttaccagctctttatgca
gcctgtgctagtctgactttcctcaacttgagctatgaaaccattaggagtggtgaattt
tcgaagcttcttgctcattgcccaaatttaaggcgcctttgggtcctagacactgtcaaa
gataagggattagaggctgttggaaccagctgcccattgcttgaagaactgcgagtgttt
cctgctgacccttttgacgaggatctagaccatggagtgacggagtcaggctttgtggct
gtgtctgccggttgtcctaagcttcaatatgttctctatttctgccggcaaatgactaat
gctgctgttgcaacaatagtgcgtaactgccctgatttcacccattttcgtctctgcata
atgaatcctggtcagccagattacgtgacaaatgaacccatggatgaggcatttggtgca
gtggtcaagacttgtacaaagctccggaggctttctgtttctggattgttgactgacctg
acctttgagtatattgggaagtatgccaaaaaccttgagacactttcagtggcttttgct
ggaagcagtgattggggtatgcagtgcgtgctagagggctgttctaagctgaggaagctg
gagataagggattgtccatttggaaatgcagcacttctttctggactggagaagtatgaa
tcaatgcggtgtctttggatgtcagcttgcagtgtcaccatgaatggttgtagactactt
gcagcaaagaggcctaggttgaatgtcgaggtaatcaaagatgagaacagtgatgattat
gctgataaattatacgtctatcgctctgtagcagggccacgaagggatgccccacctttt
gttgtaactctctag
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