Solanum dulcamara (climbing nightshade): 129872378
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Entry
129872378 CDS
T09577
Name
(RefSeq) ubiquitin domain-containing protein DSK2b-like
KO
K04523
ubiquilin
Organism
sdul
Solanum dulcamara (climbing nightshade)
Pathway
sdul04141
Protein processing in endoplasmic reticulum
Brite
KEGG Orthology (KO) [BR:
sdul00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
04141 Protein processing in endoplasmic reticulum
129872378
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04131 Membrane trafficking [BR:
sdul04131
]
129872378
03051 Proteasome [BR:
sdul03051
]
129872378
Membrane trafficking [BR:
sdul04131
]
Autophagy
Chaperone mediated autophagy (CMA)
Selective cargos
129872378
Proteasome [BR:
sdul03051
]
Eukaryotic proteasome
Proteasome interacting proteins (PIPs)
UBL-UBA shuttle proteins
129872378
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
UBQLN1
ubiquitin
Rad60-SLD
UBA
UBA_7
Ubiquitin_2
STI1-HOP_DP
Dsc3_N
Rad60-SLD_2
Motif
Other DBs
NCBI-GeneID:
129872378
NCBI-ProteinID:
XP_055803340
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Position
11:complement(52315061..52322904)
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AA seq
556 aa
AA seq
DB search
MGGGDNSAAAAKEDNENNATGDQKVTINVRCSNGSKFSVQVTLDSSVGSFKSTLSQHSDI
PAEQQRLIYKGRILKDEQTLASYGLEEDHTVHLVRGFAPAAAVNTASAVNTGNPNANQNA
PSDAAPNVGGPFAGSGLGASLFPGLGSGGSGGGLLGAGLPDFEQVQQQLTQNPNMMRDML
NMPLVQNLMNNPDIIRNMIMNNPQMREIMDRNPELAHVLNDPATLRQTMEAARNPELMRE
MMRNTDRAMSNIESSPEGFNMLRRMYENVQEPFLNATTMGGDARSDVGSNPFAALLGAQG
AGQGRDQSTNPPTTGSEATANTPAPNTNPLPNPWASAGTGAGQTNTTARSNTAGETRAPP
PSGLGGLVLPDLEGMLGGMPDAASLNQMMQNPAVSQMMQSLLSNPQYMNQMLGMNPQLRN
MLDSNSHLREMMQNPEFIRQMTSPETMQQLMTFQQGLLSQLGRQPTNQPGQNAGGAALDN
NMGMEMLMNMFGGLGSGGLGGVPNRSNVPPEELYATQLAQLQDMGFFDTQENIRALVATA
GNVHAAVERLLGNLGQ
NT seq
1671 nt
NT seq
+upstream
nt +downstream
nt
atgggcggcggtgataatagtgctgcggcggctaaagaggataacgagaataacgccacc
ggcgatcaaaaagttacaattaatgtccgatgttccaacggctccaaattctccgttcag
gtgactctagactcaagcgttggatccttcaagtccaccctttctcagcactccgacatt
cctgccgagcagcagagattgatctataaaggccggatcttaaaggacgaacaaacccta
gcaagctacggtcttgaggaagatcatactgttcatttggttcgaggttttgcaccagct
gccgctgtcaatactgcaagtgcagtcaatactggaaatccaaatgctaatcagaatgca
ccctctgatgccgctccaaatgtaggcggaccatttgctggatcgggccttggggcttca
ttgtttcctggtcttggaagtggcggcagtggtggtggtctacttggagctggccttccg
gattttgagcaggtgcaacagcagttgacccagaaccccaatatgatgagagacatgctg
aatatgcctctcgttcagaatttaatgaataacccagacatcatccgtaacatgatcatg
aacaatcctcaaatgcgagagatcatggatcgtaatcctgagcttgcccatgttctcaat
gatcctgctactcttcggcagacaatggaggctgcacgaaaccctgaacttatgcgtgag
atgatgcgtaatactgacagggcaatgagcaatattgaatcttctcccgagggatttaac
atgctgaggcgcatgtatgaaaatgtccaagagcctttcctaaatgcaacaactatgggt
ggagatgcaagaagtgatgtgggttcaaacccgtttgcagctcttttgggtgcccagggt
gcggggcaaggaagagaccagtcaactaatcctccaactactggttctgaggctacagct
aacacacctgctccaaatactaatccacttcctaatccttgggcttctgctggcactgga
gctggccaaactaataccactgctaggtcaaacactgctggggaaaccagggcaccaccg
ccttctggcttaggtggacttgtgctcccagatcttgagggaatgctgggtggcatgcca
gatgctgcttcactaaatcagatgatgcagaacccggccgtctcacagatgatgcagtct
ctcctctcaaatcctcaatacatgaaccagatgcttgggatgaatccacagctgaggaac
atgcttgattccaactcccatcttcgagaaatgatgcaaaaccctgaatttattcgacag
atgacttcccccgagacaatgcagcaacttatgactttccagcaagggcttttgtctcaa
cttggtcgacaaccaacaaaccaaccgggtcagaatgcgggaggtgcagcccttgacaac
aacatgggaatggaaatgctgatgaatatgtttggtggacttgggtcagggggtttgggt
ggtgtccccaacagatccaatgtgcctccggaggaattgtacgccactcagctagcacag
ttgcaagatatgggtttctttgacactcaagaaaatatcagagcattggttgccactgca
ggcaatgttcatgccgcagtagaaagacttcttggaaatcttggacagtaa
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