Solanum dulcamara (climbing nightshade): 129872874
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Entry
129872874 CDS
T09577
Name
(RefSeq) DEAD-box ATP-dependent RNA helicase 16
KO
K14810
ATP-dependent RNA helicase DDX56/DBP9 [EC:
5.6.2.7
]
Organism
sdul
Solanum dulcamara (climbing nightshade)
Brite
KEGG Orthology (KO) [BR:
sdul00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03009 Ribosome biogenesis [BR:
sdul03009
]
129872874
Enzymes [BR:
sdul01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
129872874
Ribosome biogenesis [BR:
sdul03009
]
Eukaryotic type
Pre-60S particles
Helicases
129872874
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Ortholog
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Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
P-loop_SecA
Motif
Other DBs
NCBI-GeneID:
129872874
NCBI-ProteinID:
XP_055803792
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Position
11:complement(43971449..43978423)
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AA seq
586 aa
AA seq
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MNKEGRIEEEEEEEEQTFEELGLDHRLIRALTKKSIDKPTPIQRVAIPLILEGKDVVARA
KTGSGKTFAYLLPLLHKLFNQSSSTKNFAPTALILVPTRELCQQVCSEANSLIELCRVQL
RLVQLTSSMSVSELKTTLAGPPEIVISTPACIQTCLSNGIIQAKAVQDSLSILILDEADL
LLSYGYEDDLKALTSHVPRRCQCLLMSATSSSDVEKLKKLILHNPYILTLPEVGDAKDDV
IPKNVQQFYISCAARDKLVHILALLKLELVQKKVLIFTNSIDMSFRLKLFFEQFGIKSAV
LNAELPQSSRLHILEEFNAGLFDYLIATDESQSEGKEQVDDQNGSERKKSKKHRKHKLDA
EFGVVRGIDFKNVHTVINYEMPQTAAGYVHRIGRTGRAYNTGASVSLVSAEETEIFEEIK
SLLGENEDKVSQFIAPFPLLSKNAVESLRYRAEDVARSVTKIAVRESRAQDLRNEILNSQ
KLKAHFQDNPKDLDLLKHDKMLSKKAPAPHLRDVPDYLLDPTTQEASKIVKLARAAMGNT
NVSRGKGSKGRFKRSRDPLKTFSAEAPKRAGKGGMKRKAKDTDNGH
NT seq
1761 nt
NT seq
+upstream
nt +downstream
nt
atgaacaaagaaggaagaatcgaggaggaggaggaagaagaagaacaaaccttcgaagaa
ttgggacttgaccatcgtctcatccgtgctttaaccaagaaaagtattgataaaccaact
cctattcagcgagttgctattcctctaatcctcgaagggaaagatgtggttgctcgagct
aagactggttctggaaagacatttgcgtatctacttcctttacttcacaagctttttaat
cagtcatcttcaaccaagaattttgctcctactgcattaattcttgtacccacaagagaa
ttgtgtcagcaggtttgttcagaggctaattcgttgattgaactatgtagagtgcaattg
aggcttgtccaattgacaagctctatgtctgtttctgaattgaaaactaccttggcggga
cctccggaaattgttatatctactcctgcctgtatacagacatgcttgtcaaatggaatt
attcaagcgaaagctgttcaagattctctatccattctcattctcgatgaggcagatctt
cttttgtcatatggatatgaagatgatttgaaagctcttacatctcatgtaccaagacgt
tgccagtgccttctgatgtctgcaacctcaagttctgatgttgaaaaactgaagaagctt
attttacacaatccgtacatcttaactttgcctgaggtgggagacgcaaaggatgacgtt
atcccaaaaaatgttcagcaattttatatttcttgtgctgctcgtgataagcttgtccat
atccttgccctcttgaagctagagttggttcagaaaaaagtgctgatatttacaaattca
attgacatgagttttagactcaaactattctttgagcagtttgggatcaagtctgcagtg
ttaaatgctgagctgcctcagagttctcgtctacacatccttgaggaatttaatgctggg
ctatttgattacttgattgcgactgatgaaagtcaatcagaaggaaaggaacaggttgat
gatcaaaatggcagtgagcgaaaaaaatcaaaaaaacatcgaaagcataaattggatgca
gagtttggtgtggtcagaggaatagacttcaaaaatgtgcatactgtgataaattatgag
atgcctcaaacagctgcaggctatgtacatcgaatcggacgtactggaagagcatataat
actggagcatctgtctctcttgtttctgctgaagagacagaaatatttgaagagattaaa
tctttactgggggaaaatgaagacaaggtgtcacagtttattgccccattcccattgctg
agtaaaaatgcagtggagtctttgcgttaccgagctgaggatgttgcaaggagcgtcaca
aaaattgcagtaagagaatcacgggctcaggatctgaggaatgaaattcttaattctcaa
aaattgaaggctcattttcaagataatccaaaagacttagatcttttgaagcatgataag
atgttaagcaagaaggcaccggccccacacctacgtgatgtgcctgactacctattggat
ccaacaacacaagaagctagcaagattgtgaagctggccagagctgcaatgggcaatact
aatgtatctcgtggcaaaggatcaaagggaaggttcaaaagaagcagagaccctcttaaa
acattttcagctgaggcaccgaagcgagcagggaaaggtgggatgaagagaaaggcaaaa
gatactgataatggccattaa
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