Solanum dulcamara (climbing nightshade): 129873019
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Entry
129873019 CDS
T09577
Name
(RefSeq) cyclic nucleotide-gated ion channel 2 isoform X1
KO
K05391
cyclic nucleotide gated channel, plant
Organism
sdul
Solanum dulcamara (climbing nightshade)
Pathway
sdul04626
Plant-pathogen interaction
Brite
KEGG Orthology (KO) [BR:
sdul00001
]
09150 Organismal Systems
09159 Environmental adaptation
04626 Plant-pathogen interaction
129873019
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
04040 Ion channels [BR:
sdul04040
]
129873019
Ion channels [BR:
sdul04040
]
Voltage-gated cation channels
Cyclic nucleotide-gated channel (CNG)
129873019
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GFIT
Motif
Pfam:
cNMP_binding
Ion_trans
IQ_SCN5A_C
IQ
TMEMspv1-c74-12
Ion_trans_2
Motif
Other DBs
NCBI-GeneID:
129873019
NCBI-ProteinID:
XP_055803975
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All DBs
Position
11:59740785..59756677
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AA seq
708 aa
AA seq
DB search
MSSRQDLRFFLSRWFGIFRRRSVQPDNSDDNDDDSNPISNSIECYACTQVGVPVFHSTSC
DGANQPEWEASAGSSLIPIQNRTDSRTGKSRSSRSRHTSGPFGRVLDPRSKRVQRWNRMI
LLARGMALAVDPLFFYALSIGRNGSPCLYMDGGLAAIVTVIRTSVDAVHLFHLWLQFRLA
YVSRESLVVGCGKLVWDARAIASHYVRSLKGFWFDAFVILPVPQAVFWLVVPKLIREEKI
KLIMTILLLMFLFQFLPKVYHSISLMRRMQKVTGYIFGTIWWGFGLNLIAYFIASHVAGG
CWYVLAIQRVASCLRQHCERSPSCNLSLSCSEEVCYQFLLPAGTVGNPCAGNSTTVIRKP
MCLDVNGPFPYGIYQWALPVVSSRSVTVKILYPIFWGLMTLSTFGNDLEPTSHWLEVIFS
ICLVLSGLMLFTLLIGNIQVFLHAVMAKKRKMQLRCRDMEWWMKRRQLPSQLRQRVRHFE
HQRWAMMGGQDEMELVKDLPEGLRRDIKRFLCLDLIKKVPLFHSLDDLILDNICDRVKPL
VFSKDEKIIREGDPVHRVVFIVRGRVKSSQNLSKGMIATSILEPGGFFGDELLSWCLRRP
FIDRLPASSATFTCIDSTEAFGLDANHLRFITDHFRYKFANERLKRTARYYSSNWRTWAA
VNIQLAWRRYMMRTSRPTIHVIENGDNEHRLRKYAAMFLSIKPHDHLE
NT seq
2127 nt
NT seq
+upstream
nt +downstream
nt
atgtcttctcgccaagacctccgcttcttcctctcaaggtggttcggaatattccgacga
agatcagttcaacctgataacagcgacgacaacgatgacgacagcaatccaatctcaaac
tccattgaatgttatgcatgcactcaagttggcgtccctgttttccactccaccagttgc
gacggagctaaccaaccggagtgggaagcttcagccggttcttccctaattccaattcaa
aaccggactgattcgagaaccggaaaatcccggtccagccgcagccgtcacacatcgggg
ccgttcgggcgtgtgttagatcctcgaagcaagcgcgtgcagagatggaaccgaatgatc
ttattggcacgtggcatggctttagctgttgatcctctattcttttacgccttatccatc
ggccgtaatggatcgccgtgcttgtacatggatggcggccttgcagccatcgtcacggtg
attcgtactagcgtcgacgccgtgcacctcttccatttgtggttgcagttccggctggct
tacgtgtcgagagaatcgctggtggtagggtgtgggaaactcgtgtgggatgcgcgtgcg
attgcttctcactatgttaggtcccttaaaggattctggttcgatgcttttgtcatcctt
cccgttccgcaggctgtattttggctggtggttccaaaactaataagagaagagaagata
aagcttataatgacaatccttctattgatgttcttattccagttcctcccaaaagtttat
cacagcataagcttaatgagaaggatgcaaaaggttactggatatatttttggtaccatc
tggtggggatttggccttaatctcattgcttattttattgcttctcatgttgctggggga
tgctggtatgttcttgcaatacaaagagtggcttcatgtctaaggcagcactgtgagcgg
agcccttcgtgtaatctatctttgtcatgctcagaggaggtgtgttatcagtttctattg
ccagcaggaactgtgggaaatccatgtgctgggaactcaacaactgtgattaggaagcca
atgtgtttggatgtcaatggaccatttccatatgggatataccaatgggcacttcctgtt
gtttcaagcagatccgtcactgttaagattctttaccccatcttttggggactgatgacc
cttagcacatttggcaatgacttagaaccaacaagtcactggcttgaagttattttcagt
atatgccttgtgcttagtggattgatgctcttcactctgttgattggtaacatccaggtg
tttttgcacgcggtcatggcaaagaagcgaaaaatgcaattaagatgtagggatatggaa
tggtggatgaagaggagacaattgccatcacaattaagacaaagagttcgccactttgaa
caccagagatgggctatgatgggtggacaagatgagatggaacttgtaaaagacttgcca
gaagggcttcgaagggatatcaaacgctttctttgccttgatcttattaaaaaggttcct
ctattccatagtttggatgatctgattctagacaacatttgtgatcgcgttaagccactt
gtcttctccaaagatgagaagatcataagagaaggagatccagtgcaccgggtggtgttc
attgttcgtggacgtgtaaaaagtagccaaaacctcagtaaaggaatgattgccacgagc
atacttgagcctggaggcttctttggagatgagcttctttcctggtgcttacgccgtccc
ttcatagacagacttccagcttcttccgcaaccttcacttgcattgattcgacagaagca
tttggcttagatgcaaaccaccttcgatttatcacggatcacttcagatacaaatttgca
aacgagaggctaaagagaacagcaaggtattattcatccaattggagaacctgggctgct
gtgaatatacagttagcatggcgacgttacatgatgaggactagccgtcccactatacat
gtgatcgagaatggggataatgagcatcgccttcgcaagtatgctgcaatgttcttgtca
atcaagccgcacgatcatcttgaatag
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