Solanum dulcamara (climbing nightshade): 129873054
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Entry
129873054 CDS
T09577
Name
(RefSeq) DEAD-box ATP-dependent RNA helicase 18
KO
K14809
ATP-dependent RNA helicase DDX55/SPB4 [EC:
5.6.2.7
]
Organism
sdul
Solanum dulcamara (climbing nightshade)
Brite
KEGG Orthology (KO) [BR:
sdul00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03009 Ribosome biogenesis [BR:
sdul03009
]
129873054
Enzymes [BR:
sdul01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
129873054
Ribosome biogenesis [BR:
sdul03009
]
Eukaryotic type
Pre-60S particles
Helicases
129873054
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Ortholog
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Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
CTE_SPB4
ResIII
Motif
Other DBs
NCBI-GeneID:
129873054
NCBI-ProteinID:
XP_055804025
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All DBs
Position
11:complement(48580406..48586719)
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AA seq
599 aa
AA seq
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MTAAAMAAANQNKALTNTRFSDLEPRLSAPVLEALTNSGFEFCTPVQAATIPLLCSYKDV
TVDAATGSGKTLAFVLPVVEILRRSSSNPKPHKVMGIIISPTRELSSQIFHVAQPFISTL
ANVRPMLLVGGLEVKADIRKIEDEGANLLIGTPGRLYDIMERMDILDFRDLEILILDEAD
RLLGMGFEKQLNSIISHLPKLRRTGLFSATQTEAVEELSKAGLRNPVRVEVRAEAKQLSG
SASGNSTSSKTPSGLHIEYLECEADKKSSQLVHLITKNKPKKIIIYFMTCACVDYWGTVL
PRLSCLKSFSLISLHGKMKQSAREKALASFTALSSGILLCTDVAARGLDIAGVDYIIQYD
LPQDDKMFIHRVGRTARLGRQGSAVVFLLPKEEAYVEFLRIKDVFLEEGECASDAPDIID
EIRSAAKKDRDVMEKGLRAFVSYIRAYKEHHCSYILRWKELEIGKLGMGYGLLQLPSVPD
VKHHSLSTKGFTAVEDIKLDEIKYKDKSREKQRKKNLQAKKAAMAQEVEQKTQRLKKESN
STASAMRKKTAKQRRATQLVEDEDEITREYRLLKKLKKGAIDENEFAKLTGTEDLLSDT
NT seq
1800 nt
NT seq
+upstream
nt +downstream
nt
atgactgcggcagctatggcggcggcgaatcagaacaaagccttaacgaatactcgtttc
tccgacctcgaaccacggctgtctgcgccagttttggaagccctaaccaactccggcttc
gagttctgcactcctgttcaggccgccaccatacccttactctgcagctacaaggatgta
accgtcgacgccgccactggctctggtaaaaccctagccttcgtcttacctgtggttgag
atcctccgtcggtcctcctccaatcccaaacctcacaaggtaatgggtataattatatca
cccaccagggagttgtcgtcacaaatatttcacgttgctcaaccgttcatttccacatta
gcaaatgttaggcctatgcttcttgttgggggactagaagtaaaggcagatatcagaaag
atagaggatgaaggagcaaatttgttgatcgggacacctgggaggctatatgacataatg
gagcgcatggatatactggactttcgggatcttgagatcctgatattagatgaagctgat
aggctattaggcatgggattcgagaagcagctaaattcaatcatttctcatttacctaag
cttcgtagaacgggtctcttctctgctacgcaaactgaggcagttgaagaactatcaaag
gcaggattgagaaatcctgttagggttgaagttcgggcagaagcaaaacagttgagcggt
tctgcatctgggaattcgacctcgtcaaaaacaccttctggccttcatattgagtatctt
gaatgcgaagcggacaagaaatcatcgcaacttgtacatctcataacgaagaacaagcca
aaaaaaattataatttatttcatgacttgtgcttgtgttgattattggggaactgttctt
ccacgtctctcttgtctgaaaagtttttcgttaatctctcttcatggaaagatgaagcag
agtgcaagggagaaagcactagcatcatttacagctctttccagtggtattcttttatgc
acagatgtagctgcacgtggacttgatattgcaggtgttgattatataatacagtatgac
cttcctcaggatgataaaatgtttatacatagagtaggccgaacagctaggctgggccga
caaggtagtgctgttgtttttctattaccaaaggaggaagcatatgtggagttcttgcgt
ataaaagacgttttcttagaagagggggaatgtgcctctgatgctcctgatattatagat
gaaatacggtccgcagcaaagaaagatcgcgatgtaatggagaaaggactcagagccttt
gtatcatacatccgtgcgtacaaagagcaccactgctcttacattttaaggtggaaggag
cttgagattgggaagttgggcatgggatatggtcttttgcagcttccttctgtgcctgac
gtgaagcatcattctctttctacaaagggatttactgctgttgaagatatcaagctggac
gagatcaagtataaggacaagtccagggagaagcaaagaaagaagaatttgcaagcaaaa
aaggctgcaatggcacaagaagtagaacagaagacacagagacttaaaaaagaatcaaat
tctacagcatctgccatgagaaagaaaactgccaaacagagacgtgctacgcagttagtt
gaagatgaagatgagatcacaagggagtaccgcttattgaaaaagctaaaaaagggagct
atcgatgagaatgagtttgcaaaattgactgggactgaagacttgctttctgacacatga
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