Solanum dulcamara (climbing nightshade): 129873117
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Entry
129873117 CDS
T09577
Name
(RefSeq) nibrin homolog isoform X1
KO
K10867
nibrin
Organism
sdul
Solanum dulcamara (climbing nightshade)
Pathway
sdul03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
sdul00001
]
09120 Genetic Information Processing
09124 Replication and repair
03440 Homologous recombination
129873117
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
sdul03032
]
129873117
03400 DNA repair and recombination proteins [BR:
sdul03400
]
129873117
DNA replication proteins [BR:
sdul03032
]
Eukaryotic type
DNA Replication Termination Factors
MRN complex
129873117
DNA repair and recombination proteins [BR:
sdul03400
]
Eukaryotic type
DSBR (double strand breaks repair)
HR (homologous recombination)
MRN(MRX) complex
129873117
BRCA1-C complex
129873117
BRITE hierarchy
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Gene cluster
GFIT
Motif
Pfam:
FHA
BRCT
Nbs1_C
PTCB-BRCT
Motif
Other DBs
NCBI-GeneID:
129873117
NCBI-ProteinID:
XP_055804108
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Position
11:complement(51056799..51071533)
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AA seq
568 aa
AA seq
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MVWGLFPVDPLPGEDNYYFFNKGTYKVGRKGCDVIVNKDKGVSRIHAEILIDEMSSLDHS
LKKPSNILSKVRVRDCSKYGTFLNKNLDLKEKVHEFPNKETMLKDGDLVSFGTGNATYRF
SYVSFIFFICSLKHSKTNQLITKKVSSIGASITKKWSLNCSHVLVDDSFPLSDDLIDAIV
ARKPLVQYSWVELIAGKNICTNIPSYSFHAPKLMLEGVSVKVVDPQSRECCLKGYAFLLE
PENKYNFEGRLQSLLEVGGANISSEMVCPNGVSEKNGNDLVVCVAPAGSSNFKCFSNQSS
LPWVSEIDLVSAVLSGYLDPSLITSPPVLVTSSCSTDETVVADSDAETESTKSDHIAAAF
CSIESSEHDSKGTTSTHKLESVEYHNKDKCSVQIIIPKDKVSTRDTSPSSTKHIKHDGGH
IPHDDATIHDPEGGYIRRLGVKSDNTTAKEDITDERENGKLDIIYSHDLIVRDSIVSLPV
SSLTNGGVANFKRFRKANAPSQNSFAMFIPFSKHPYQESECKNEDVAESIKEEKKRKQME
AIAEDLFKSEKGRQRGVAGSLHGLFARR
NT seq
1707 nt
NT seq
+upstream
nt +downstream
nt
atggtttggggcctttttcctgttgatcctcttccaggtgaagataattactatttcttc
aacaaaggtacatataaagtgggccgaaaaggatgtgatgtcattgtcaacaaggataaa
ggcgtttcaaggatccatgcagagattttaatagatgagatgagttctttggatcattcg
ttgaagaaaccctcaaatattctgtctaaagtgcgtgtaagagactgctcaaagtatggt
acattcctcaacaagaacttggatttgaaagagaaagttcacgagtttccaaataaagaa
acgatgcttaaggatggggatctagtttcatttggaactggtaatgcaacttacagattc
tcttatgtgtccttcatatttttcatttgctccctgaagcattcaaagacaaatcaactt
attacaaagaaggtttcatcaataggtgcaagtataactaagaagtggagtttgaactgc
tcacatgtgcttgtagatgactcctttccactaagtgatgacctgattgatgctattgtc
gctagaaaacccttggttcaatatagttgggttgagctaattgcaggaaaaaatatttgc
accaatattccaagctacagttttcatgcaccaaagttgatgctggaaggagtttccgtg
aaagtggtagatcctcagtctcgggagtgttgtttgaaaggatatgcttttttgctggaa
ccagaaaacaagtataactttgagggcaggttgcagtccttactggaagttgggggtgcc
aacatttcttctgaaatggtctgtcctaatggcgtctcggagaaaaatggaaatgaccta
gtggtatgtgtagctccagcaggatcaagcaactttaagtgtttttctaaccagagttcc
ttgccttgggtgagtgaaatagatttggtttctgcagttctatctggatatctggatcct
tctctaatcacatccccaccggtgctcgttacctcttcatgttccacagatgagacagtg
gttgcagactcagatgcagaaacagaaagtacaaaatcagatcatattgctgccgctttc
tgttcaatagaatcttcagagcatgacagcaagggaacaacttctacacacaaattagaa
tctgttgaatatcacaacaaagataagtgttctgttcaaattattatacctaaggataag
gtatccaccagggacacatctcccagttcaacaaaacatattaaacacgatggaggtcac
ataccacatgatgatgctaccatccatgaccctgaaggtggttacatcaggcgcttaggt
gtcaaaagtgataatacaacggcaaaagaagatatcacggatgagcgggaaaatgggaag
ttggatatcatatatagccatgatttaattgttagagattctatcgtgtcattaccagtc
tcttctttaacaaatggtggagttgcaaattttaagcgctttcgtaaggcaaatgctcca
tcccagaatagctttgcaatgttcattccattctccaagcatccatatcaagaatctgag
tgtaagaatgaggatgttgctgaatctattaaagaagagaaaaaaagaaaacagatggaa
gcaattgctgaggacctgtttaaaagtgaaaagggaagacaacgtggtgtagctggttcc
ctgcatgggttgtttgctcgtagataa
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