Solanum dulcamara (climbing nightshade): 129873180
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Entry
129873180 CDS
T09577
Name
(RefSeq) nuclear pore complex protein NUP98B-like isoform X1
KO
K14297
nuclear pore complex protein Nup98-Nup96
Organism
sdul
Solanum dulcamara (climbing nightshade)
Pathway
sdul03013
Nucleocytoplasmic transport
Brite
KEGG Orthology (KO) [BR:
sdul00001
]
09120 Genetic Information Processing
09122 Translation
03013 Nucleocytoplasmic transport
129873180
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
sdul03019
]
129873180
03036 Chromosome and associated proteins [BR:
sdul03036
]
129873180
Messenger RNA biogenesis [BR:
sdul03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
Nuclear pore complex
129873180
Chromosome and associated proteins [BR:
sdul03036
]
Eukaryotic type
Centrosome formation proteins
Spindle formation proteins
129873180
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Nucleoporin2
Nup98_GLEBS
Motif
Other DBs
NCBI-GeneID:
129873180
NCBI-ProteinID:
XP_055804188
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Position
11:62182584..62190188
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AA seq
871 aa
AA seq
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MSIFSLNNTAPTSSPSFSNMNLFGSTSGIQQTSNSGVFGTITSSPFGSSTSFGGNESTTP
LLKSSGFGKSAFGINHEGSRTTSYIATPEIDSTRPGGANIQSICGMQTYQDKSHDELRFE
DYQLGDKGTLAFNAAMNATSSQTQSISLGSSTLQTFGKKYDVNSVAKESLMRDANVSDSS
ILGYPRAPAFGVPSNSHSATPRFDSYSFGQPAVSISGSKGKESTAPLLKSSGFVKSAFGI
NQKGSRTASYIATPDIDCTIPDGAKIQSICGMQTYKDKSQEELRFEDYQLGDKGQKCGSS
CGISGTQGFGIIDNTRPFISPVFNQATVDQLFYSLFPSTFVVERAEVDSLSDEISTATAS
TPFPKSQSISHIFPPNTSLLNSCGTGSRVESTASDVSFSLWIHSRPFAPLNPSSNSSTTS
TFSPLRNPWSLSTSVPLSPCSVSPSTYPLLAKSSAHVFGQKNSFSPTPVLTTGGAPQSTL
CLNCLKQSQPTPPGLCNVSSTPLAVSQNTPLFFGPLQPEMTPKVGATLPTTNASHPSTEG
ASCSEIGQGICQPSINDQQSYFPRIMEVNASPIMPPAKRQPSVQISVEHPNLATSIQYGI
SSLPLQVSNNPAPVRRRSALIIRHSSLSQHRLPPQKYKPTSDKPKVPFFMDKENTSGVLR
TEVIIIPRENPRDWVRPTSEFLLGADSSMNGMHDRDKAGDKPKLEAEEMHLVNCGDDKDV
DGIMPKLQRVDYYTVPPMEELISKEKEEAGFCCHVKDFVVGRHGYGSIKFLGETDVQKLD
LDSTVNFNRREVIIYMDESKKPPVGQGLNKPAEITLLNVRCINKSTGKEYRDGPMVNKYR
DMLIKKTVEQDAVFVSYDPVEGKWKFRVSHF
NT seq
2616 nt
NT seq
+upstream
nt +downstream
nt
atgtcgatattttccttgaataataccgctccaacttcaagcccgtcatttagcaacatg
aacctatttggttctacatccggaattcaacagactagcaactccggtgtgtttggaaca
ataacctcatctccttttggaagctcaacatcttttggcggaaatgaaagtacaactcct
ttgctcaagagctctggttttggaaagtctgcatttggtattaatcacgaaggaagtaga
acaacatcatacattgcaactccagagatagatagtacaagacccggtggtgcaaacatt
caatccatttgtggaatgcagacttatcaagataaaagccacgacgagttgaggtttgag
gactaccagttaggtgataaagggacattagcctttaatgcagcaatgaatgctacatct
agtcaaacacaaagcatatctctgggctcatccactttacaaacatttggaaagaaatat
gacgttaacagcgtggccaaggaatctctgatgagggatgccaatgtctcagactcctcc
attcttggatatccaagagctcctgcatttggtgttccaagcaactcacactctgccacc
ccaagatttgattcctattccttcggccaaccagcagtatccatatcagggagcaaagga
aaagaaagtacagcacctttgctcaagagctctggttttgtaaagtccgcatttggtatt
aatcagaaaggaagcagaacagcatcatacattgcaactccagatatagattgcacaata
cctgatggtgcaaaaattcaatccatttgtggaatgcagacttataaagataaaagccag
gaggagttgaggtttgaggactaccagttaggtgataaaggtcagaaatgtggttcttca
tgtggtatttccggtacacagggatttggtatcatcgacaacacacggcctttcatatca
ccagtatttaaccaagcaactgttgatcaacttttttattccctttttccaagtacattt
gtagtggaaagagcagaggttgactctctatcagatgaaatttctacagcaactgcatct
accccatttccgaagtcacagtccatttcccatatatttccccccaatacatcattgtta
aactcttgtggcactggaagtagagtggaatctactgcctcagatgtttctttttctctg
tggatccattcaaggccgtttgcacctttaaatccatcttccaattcttccactacctcc
accttttctccattaaggaatccatggtctttatcaacatctgtccctctatctccatgt
tcagtctcaccttccacatatcctttgttagcaaaatcatctgcccatgtttttggtcaa
aagaactctttttctcccactcctgttttaactacaggaggtgctccacaatccacatta
tgcttgaattgcctaaagcagtctcagcctactccaccaggactttgtaatgtttcaagc
actccacttgctgtgagtcaaaatactcctctgttctttgggcctctgcagccagaaatg
actcctaaagttggagcaacacttccaacaaccaacgcttctcacccatcaacagaaggt
gctagttgctcagaaattggacaaggaatttgtcagccaagtatcaatgaccaacagtct
tactttccgagaatcatggaagtgaatgcgtcaccaattatgcctcctgctaaaagacaa
ccttcagtccaaatctcggttgagcacccaaatttggcaacatccatccagtatggaatt
tctagtttacctttgcaggtttctaacaaccctgctccggtcagacgaagatctgcgttg
ataattcggcattcatctctaagtcagcataggttgccacctcagaaatacaaacctaca
agtgataaaccaaaggtaccctttttcatggataaagaaaacacttctggtgtactaagg
acagaagtcatcatcattccaagggaaaatccaagggactgggttcgtcctacctcagaa
tttctactgggagctgattcatctatgaacgggatgcatgacagagacaaagctggtgat
aagcccaagttagaggctgaagaaatgcatcttgttaattgtggcgatgataaggatgtt
gatggcataatgccgaagctccaacgtgttgattactacacagttcctcctatggaggag
ttgatatcaaaggagaaggaagaagctggtttttgttgccacgtgaaggactttgtggta
ggaagacatgggtatggaagcatcaagttcttgggagaaaccgatgtccagaagcttgat
cttgattctactgtcaatttcaaccgtcgtgaggtgataatctatatggatgagagcaag
aaacctccagttggacaaggcctcaacaagccagctgagataactcttcttaatgtcaga
tgcatcaacaaatcgactggaaaggagtatagagatggaccaatggtcaataagtacaga
gatatgctcattaagaaaacggtagagcaagatgcagtatttgtttcttatgatccagtg
gaagggaagtggaaatttagggtgtcacacttctaa
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