Solanum dulcamara (climbing nightshade): 129873367
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Entry
129873367 CDS
T09577
Name
(RefSeq) DNA-directed RNA polymerase II subunit RPB1
KO
K03006
DNA-directed RNA polymerase II subunit RPB1 [EC:
2.7.7.6
]
Organism
sdul
Solanum dulcamara (climbing nightshade)
Pathway
sdul03020
RNA polymerase
sdul03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
sdul00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
129873367
09124 Replication and repair
03420 Nucleotide excision repair
129873367
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
sdul03021
]
129873367
03400 DNA repair and recombination proteins [BR:
sdul03400
]
129873367
Enzymes [BR:
sdul01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
129873367
Transcription machinery [BR:
sdul03021
]
Eukaryotic type
RNA polymerase II system
RNA polymerase II
Core subunits
129873367
DNA repair and recombination proteins [BR:
sdul03400
]
Eukaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase II complex
129873367
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb1_1
RNA_pol_Rpb1_5
RNA_pol_Rpb1_2
RNA_pol_Rpb1_6
RNA_pol_Rpb1_7
RNA_pol_Rpb1_3
RNA_pol_Rpb1_4
RNA_pol_Rpb1_R
TACC_C
Motif
Other DBs
NCBI-GeneID:
129873367
NCBI-ProteinID:
XP_055804426
LinkDB
All DBs
Position
11:complement(52679991..52688118)
Genome browser
AA seq
1846 aa
AA seq
DB search
MDLRFPFSPAEVAKVRTVQFGIVSPDEIRQMSVVHIEHGETTERGKPKPGGLSDPRLGTI
DRKMKCETCMANMAECPGHFGHLELAKPMFHIGFMKPVLSILRCVCFNCSKILADEDDPK
FKQAMRIRNPKNRLRKMLDACKNKTKCEGGDEIDVQGQDSEEPVKKSRGGCGAQQPKISI
DGMKMVAEYKMQKKKSDDPEQMPEPVERKQQLSAERVLSILKRVSDEDCLLLGLNPEFAR
PDWMILQALPIPPPPVRPSVMMDTSSRSEDDLTHQLAMIIRHNENLKRQERNGAPAHIIS
EFAQLLQFHIATYFDNDLPGQPRATQRSGRPIKSICSRLKSKEGRIRGNLMGKRVDFSAR
TVITPDPTINIDQLGVPWSIALNLTYPETVTPYNIERLKELVEYGPHPPPGKTGAKYIIR
DDGQRLDLRYLKKSSDQHLELGYKVERHLNDGDFVLFNRQPSLHKMSIMGHRIKIMPYST
FRLNLSVTSPYNADFDGDEMNMHVPQSFETRAEVLELMMVPKCIVSPQANRPVMGIVQDT
LLGCRKVTKRDTFIEKDVFMNILMWWEDFDGKVPAPVILKPRPLWTGKQVFNLIIPKQIN
LLRYSAWHNDSEKGYITPGDTQVRIEKGELLSGTLCKKTLGTSTGSLIHVIWEEVGPDAA
RKFLGHTQWLVNYWLLQQAFSIGIGDTIADASTMEKINETISNAKSKVKELIKAAQEKQL
EAEPGRTMMESFENRVNQVLNKARDDAGSSAEKSLSESNNLKAMVTAGSKGSFINISQMT
ACVGQQNVEGKRIPFGFIDRTLPHFTKDDYGPESRGFVENSYLRGLTPQEFFFHAMGGRE
GLIDTAVKTSETGYIQRRLVKAMEDIMVKYDGTVRNSLGDVIQFLYGEDGMDSVWIETQK
LDSLKAKKGTFDDMYAYEIDDPNWNPSYMLPEAVEDLKGIREIRSVFDAEVQKLEADRHQ
LGTEIAVTGDNSWPLPVNIQRLVLNAQKTFKIDFRRPSDMHPMEIVEAVDKLQERLKVVP
GDDYLSMEAQKNATLFFNILLRSALASKRVLKEYRLSREAFEWVVGEIESRFLQSLVAPG
EMIGCVAAQSIGEPATQMTLNTFHYAGVSAKNVTLGVPRLREIINVAKKIKTPSLSVYLK
PEVGKTKERAKTVQCALEYTTLRSVTQATEVWYDPDPMSTLIEEDVEFVKSYYEMPDEEI
DPDKISPWLLRIELNREMMVDKKLSMADIAEKINLEFDDDLTCIFNDDNAEKLILRIRIM
NDEAPKGELDESAEDDVFLKKIESNMLTEMALRGIPDINKVFIKNSKVQKFDDNEGFKAE
NEWMLDTEGVNLLAVMTHEDVDASRTTSNHLIEVIEVLGIEAVRRSLLDELRVVISFDGS
YVNYRHLAILCDTMTYRGHLMAITRHGINRNDTGPMMRCSFEETVDILLDAAVFAESDHL
RGVTENIMLGQLAPIGTGGCSLYLNEEMLKQAIEIPLPSYMEGGLEFGMTPGRSPISGTP
YHDGMMSPNYLLSPNMRMSPITDAQFSPYVGGMAFSPTSSPGYSPSSPGYSPSSPGYSPT
SPGYSPTSPGYSPTSPGYSPTSPTYSPSSPGYSPTSPAYSPTSPSYSPTSPSYSPTSPSY
SPTSPSYSPTSPSYSPTSPAYSPTSPAYSPTSPAYSPTSPSYSPTSPSYSPTSPSYSPTS
PSYSPTSPSYSPTSPSYSPTSPAYSPTSPGYSPTSPSYSPTSPSYSPTSPSYNPSARYSP
SLAYSPTSPKLSPSSPYSPSSPSYSPTSPSYSPTSPSYSPSSPTYSPSSPYNNSGTSPDY
SPSSPQYSPSAGYSPSAPGYSPSSTSQYTPRVSERDNKSVKDDKAG
NT seq
5541 nt
NT seq
+upstream
nt +downstream
nt
atggatttgcgcttccccttctcgccggcggaggttgccaaggtccggacggtccaattc
ggcattgtcagccccgacgaaattagacaaatgtccgtggtgcacattgagcatggtgag
actacggagagagggaaaccaaagcctggagggttgagcgatcctcggcttgggacaatt
gatcggaagatgaagtgcgagacgtgtatggctaacatggcagagtgtccagggcatttt
ggtcaccttgagctagccaagcctatgtttcatatcgggtttatgaagcctgtacttagt
atccttcgttgtgtctgcttcaactgctcgaaaattctggcagatgaggacgaccccaaa
ttcaagcaagccatgagaatcaggaatcctaaaaacaggctgagaaagatgttggatgct
tgcaaaaataaaacaaaatgtgaaggaggggatgaaattgatgtacaaggtcaagattct
gaggaacctgtcaagaagagtagaggtggctgtggtgcacagcagccaaaaatttcaata
gatggtatgaaaatggttgctgaatataagatgcaaaagaaaaagagtgatgacccggag
cagatgccagaaccagttgaaaggaagcaacaactctctgctgaaagggtgttgagcatt
ctgaagagggtaagtgacgaagactgcctcttgcttggcctaaatccagagtttgctcgc
ccagattggatgattcttcaagcacttcctataccaccgccacctgttcggccttctgtg
atgatggacacttcatcaaggagtgaggatgatttaacacatcaactggccatgattatt
cgtcacaacgagaatttgaagaggcaggaaaggaatggggcaccggcacacatcatttcg
gagtttgcacagttattgcaatttcatatagctacgtattttgataatgatctgcctgga
caaccaagagctacacaaagatcaggtagacctattaaatcaatatgtagtagattaaaa
tcaaaggaaggtcggatcagaggcaatctgatgggcaaaagagtagacttttctgctcgg
acagttattactcccgatccaactattaacattgatcaattgggagtcccatggagtatt
gctctgaatctcacttatccagaaacagtgacaccatataacattgaaaggttaaaggag
cttgttgaatacggacctcatccaccacctggtaaaaccggggccaagtatataattagg
gacgatggccaaaggcttgatctccgatacttgaagaagagcagtgatcagcaccttgaa
ctaggatataaggttgagaggcacttaaatgatggggattttgttctcttcaatcggcaa
cccagtctacacaaaatgtctattatggggcataggattaagatcatgccatactcaact
ttccgattgaatttatctgtcacttcgccatacaatgctgattttgatggtgacgaaatg
aacatgcatgttccccagtcatttgaaaccagagcagaggtgctggagcttatgatggtc
cccaagtgtatcgtttcaccccaggcaaatagacctgtaatgggtatcgttcaggatacc
cttttaggttgccgcaaagttactaaaagagatacctttatagaaaaggatgtctttatg
aacatcttaatgtggtgggaggattttgatgggaaagtacccgctccagtgattcttaaa
ccaaggccgctttggactggaaagcaagtgtttaacctcatcataccaaaacaaataaat
cttttaagatattccgcatggcataatgattcagaaaaagggtacataactcctggagat
actcaagttagaatagagaaaggggagttgctatctggtactctttgcaaaaagaccctt
gggacatccaccggaagtctgattcatgttatatgggaggaggttgggcccgatgctgct
cgaaagtttctgggacatacacagtggctggttaattattggcttcttcagcaagcattt
agcattggaataggagatacaattgctgatgcttcaactatggagaaaattaatgaaact
atctcgaatgcaaaaagcaaagtcaaagaacttattaaagctgctcaagagaagcagtta
gaagctgaaccagggcgaactatgatggaatcattcgagaacagagtgaaccaggtgtta
aataaggctcgtgatgatgctggaagcagtgccgagaagagtttatcagagagcaataat
cttaaggctatggttactgctggctcgaagggaagttttatcaacatatctcaaatgact
gcttgtgtggggcaacagaatgttgaagggaaacgtattccttttgggttcatagatcgt
actcttcctcatttcaccaaggatgattatggtccagaaagtcgtggttttgtggagaat
tcatatcttcggggactgaccccgcaggagtttttcttccacgctatgggtggtagagaa
ggtttgattgatactgctgtgaaaacttctgagactgggtacatccagaggcggttagtg
aaggccatggaggatatcatggtcaagtatgatggcactgttaggaattcattgggggat
gtcatccagtttctgtatggggaagatgggatggattctgtttggattgagacacagaag
ctggattctctgaaagcaaagaaaggaacatttgatgacatgtatgcatatgagatcgat
gatcctaactggaacccaagttacatgttaccagaagctgtcgaagatctaaaaggtatt
cgggagattcgtagtgtgtttgatgcagaggttcagaagcttgaagctgatagacaccag
cttgggacagaaattgctgtaacgggtgataattcttggccacttcctgttaacattcag
aggcttgtcttaaatgcccaaaagacatttaagatagatttccggaggccctctgacatg
catcctatggagatcgtggaagctgttgataagttgcaagagaggcttaaggttgttcct
ggtgatgattatctaagcatggaggctcaaaagaatgctactcttttcttcaatatcttg
ctccgtagtgccttggctagtaaaagggttctgaaggagtataggcttagtcgagaggct
tttgaatgggtagttggtgagatagagtctcgtttcttgcaatcccttgtggcaccagga
gagatgattggctgtgttgctgcacagtctattggtgaacctgccacacagatgactctt
aatacatttcattatgctggtgtgagtgccaagaatgttactcttggtgtgccaaggttg
agggagatcatcaatgttgccaagaaaatcaaaacaccctctctttctgtgtacttgaaa
cctgaggtaggcaaaacaaaagagagggccaaaactgtccagtgtgccttggaatatacc
actttgcggagtgttactcaagccaccgaagtgtggtatgatccagatcctatgagcacc
cttattgaggaagatgttgagttcgtcaagtcatactatgaaatgccagatgaagagatt
gaccctgacaaaatctccccatggttgcttcgcatagagttaaatcgtgaaatgatggtg
gataagaaacttagcatggctgacattgctgaaaagatcaaccttgaatttgatgatgac
ttaacctgtatctttaatgatgataatgcggaaaagttgatccttcgaattcgtattatg
aatgatgaagctccaaaaggtgaactggatgaatctgctgaggatgatgtattccttaag
aagatcgagagtaacatgcttacggagatggctctccggggcattccagatattaacaag
gtgttcataaagaatagtaaggtgcagaagtttgatgacaatgaaggatttaaagcagaa
aatgaatggatgttggacactgagggtgtgaatcttttggctgttatgacgcacgaagat
gtggatgcaagtagaacaacaagtaatcacttgattgaagttattgaagttcttggtatt
gaggcagttcgtagatcactgctggatgagttgagggtcgtcatatcttttgatgggtcc
tatgtgaactaccgacatctggccatattgtgtgataccatgacctaccgtggtcattta
atggccattactcgtcatggtatcaaccggaacgacactggtcccatgatgagatgctca
ttcgaggagacagtggacattcttctcgatgctgctgtatttgcagagtcggatcacctg
aggggtgtaacagaaaatatcatgttaggtcagcttgcaccaattggcacaggaggctgt
tctttgtacctcaatgaggagatgttgaaacaagctattgagataccattacctagctac
atggaaggtggtcttgaatttggcatgacacctggacgttcgcctatcagtggaacccca
tatcatgacggaatgatgtctccaaattatttgctcagcccaaatatgcggatgtcaccg
attacagatgctcagttttctccttatgtgggtggaatggctttctctcccacttcatcc
cctggttacagcccgtcatcccctggttacagcccatcatcccctggttacagcccgacc
tctccagggtacagccctacttccccgggttacagccccacatctcctgggtacagcccc
acttcccccacttatagccccagctcccctggctacagtccaacaagtccagcatattct
ccaaccagtccttcatactcacccacatcacccagttatagtccaacatctccaagctat
agcccaacatcccctagctatagcccaacatcgcctagctatagccctacttctcctgcc
tacagtcccacttctcctgcctacagccccacttctcctgcctacagccccacttctcca
tcgtacagccccacttcgccttcttacagccccacttcaccatcttacagccccacatcg
ccttcatacagccccacatcgccatcatatagccccacttcaccatcttatagtccgact
tctcctgcatacagtcctacctcccctggttacagcccaacatctcccagctatagccca
acatcaccatcctacagtcctacatcaccaagttacaatccctcagcgagatacagcccc
tcccttgcgtattcgccaaccagcccgaagctgtctccttctagtccatacagcccgtca
tctccaagttacagtcctacgtcaccatcgtactctccaacatctccatcatattctcct
tcaagcccaacctatagtcccagcagtccatacaacaactcaggtacaagtccagattat
agtcccagttctccccagtacagtccaagtgcaggatactcaccaagtgctcctgggtat
tcaccatcatctactagtcagtacaccccacgcgtaagtgagagagacaacaagagtgtc
aaagatgacaaggctggttga
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integrated database retrieval system
