Solanum dulcamara (climbing nightshade): 129873808
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Entry
129873808 CDS
T09577
Name
(RefSeq) uncharacterized protein LOC129873808
KO
K12847
U4/U6.U5 tri-snRNP-associated protein 2
Organism
sdul
Solanum dulcamara (climbing nightshade)
Pathway
sdul03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
sdul00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
129873808
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
sdul03041
]
129873808
Spliceosome [BR:
sdul03041
]
Complex B
U4/U6.U5 tri-snRNP components
U4/U6.U5 tri-snRNP specific factors
129873808
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
UCH
zf-UBP
TFIIF_alpha
zf-UBP_var
Motif
Other DBs
NCBI-GeneID:
129873808
NCBI-ProteinID:
XP_055804970
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Position
11:complement(42004183..42012538)
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AA seq
551 aa
AA seq
DB search
MTKKREVEDGVLAEEANAKRQKVMDQSSPSLPPVAFENPLLPLASYDDDEDDEDDGRRGH
IAEQVINNGGNKEQNGYSSDEEEDEDDGRIQGKRNRAIEIRRDCPYLDTVNRQVLDFDFE
KFCSVSLTNLNVYACLVCGKYYQGRGPKSHAYTHSLEAGHHVFINLRTEKVYCLPDGYEV
IDPSLDDIIHVLNPRFTQEQVEQLDKSRQWSRALDGSDYLPGTVGLNNIKETDFVNVTIQ
SLMRVTPLRNFFLIPENYQHNRSPLVHRFGELTRKIWHARNFKGQVSPHEFLQAVMKASK
KRFRIGAQSDPVEFMSWLLNTLHMELRSSKKGSSIIHRCFQGELEVVKEMHNRPIAEKRE
NGEDGEQESHNTGMETSRMPFLMLGLDLPPPPLFTDVMEKNIIPQVPLFNILKKFDGETV
TEVVRPRIARMRYRVTKLPRYLILHMRRFTKNNFFMEKNPTLVNFPVKNLELKDYIPLPA
PKENEKLRSKYDLIANIVHDGKPGEGSYRVFVQRKSEELWYEMQDLHVSETLPQMVALSE
TYMQIYEQHQQ
NT seq
1656 nt
NT seq
+upstream
nt +downstream
nt
atgacgaagaagcgagaagtagaagatggtgtgttggctgaggaggcaaatgcaaaacgg
cagaaggtaatggatcagtcgtctccctctcttccaccagttgctttcgaaaatccactt
cttccacttgcatcttatgatgatgatgaagatgacgaggatgatggtaggagaggacac
attgctgagcaagttataaataatggtggaaacaaggagcagaatggctactcatctgac
gaagaagaagatgaggatgatggtagaatccaagggaagcgaaatcgtgcaattgagatt
aggagggactgcccctatcttgatactgtgaatagacaggtattggattttgatttcgag
aaattttgttcagtctctctcacaaatttaaatgtgtatgcatgtttagtttgtgggaag
tattaccaaggaagggggccgaaatcccatgcatacacacacagtcttgaagcaggacac
catgtgttcatcaatttacgaacagagaaagtttattgtcttcctgatggatatgaagtc
atagatccatcgcttgatgacattatacatgttctgaatccaagatttactcaggaacag
gttgagcaactcgataagagccggcagtggtctagggcacttgatgggtctgattatctt
cctggaacggttgggctgaataacatcaaggagactgattttgtcaatgtcacgattcag
tctttgatgcgagtaactcccttgagaaacttctttcttatacctgaaaattatcaacac
aataggtctcctcttgttcatagatttggagagcttacccgaaagatttggcacgcacgg
aactttaagggacaggtcagtccgcatgagttcctgcaagcagttatgaaagctagtaaa
aaacgttttcggataggtgcccagtctgaccctgttgaatttatgtcatggctcctgaat
acccttcacatggagcttagaagttccaaaaaaggcagtagcataatccatcggtgcttt
cagggggaattggaggttgtgaaggagatgcataatagacctattgctgagaagagggag
aatggggaagatggtgaacaggaatctcacaacactggcatggaaactagtagaatgcct
ttcctaatgcttggacttgatttgccaccaccacctctttttacggatgtcatggaaaag
aatattattccccaggttccattattcaacatactgaagaagtttgatggtgagactgtg
actgaagttgtaaggccccgtatagcaaggatgagataccgtgtaacaaagttgccacgg
tatctaattctccacatgcgtaggtttacaaagaacaatttcttcatggagaaaaatcct
acacttgtgaacttcccggtgaagaatctagagctcaaggattatattcccctgccagca
ccaaaggagaatgagaaacttcgctcaaaatatgatttgattgctaatatcgttcatgat
ggtaaaccaggcgaaggatcatacagagtgtttgtccaacgaaaatcagaagaactttgg
tatgagatgcaagacctacatgtttctgaaactcttccccagatggttgcactttctgag
acttatatgcagatatatgagcagcatcagcagtaa
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