Solanum dulcamara (climbing nightshade): 129873971
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Entry
129873971 CDS
T09577
Name
(RefSeq) ATP-dependent RNA helicase-like protein DB10
KO
K12823
ATP-dependent RNA helicase DDX5/DBP2 [EC:
5.6.2.7
]
Organism
sdul
Solanum dulcamara (climbing nightshade)
Pathway
sdul03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
sdul00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
129873971
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
sdul03041
]
129873971
03009 Ribosome biogenesis [BR:
sdul03009
]
129873971
Enzymes [BR:
sdul01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
129873971
Spliceosome [BR:
sdul03041
]
Complex A
U1 snRNP components
U1 related factors
129873971
Complex B
129873971
Ribosome biogenesis [BR:
sdul03009
]
Eukaryotic type
Pre-60S particles
Helicases
129873971
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
WW
ERCC3_RAD25_C
Motif
Other DBs
NCBI-GeneID:
129873971
NCBI-ProteinID:
XP_055805148
LinkDB
All DBs
Position
11:61626046..61634956
Genome browser
AA seq
731 aa
AA seq
DB search
MAATATASSAGPRYAPEDPTLPKPWKGLVDGKTGYLYFWNPETNTTQYERPVAISHGGTA
QHKSSVSVSSSVERPSQSQHPDRDDNRGTNGGLSKLSSGEGIQTARGNEHSRDGTSAPKG
YSVPAAGSDISPDAYRRQHEISVTGGDVPPPFTSFEATGFPSEILREIHQAGFPAPSPIQ
AQSWPIALQGRDIVAVAKTGSGKTLGFLLPGFILLKQRRSNPQSGPTILVLSPTRELATQ
IQDEAVKFGRSSKISCTCLYGGAPKGPQLRDLDRGVDIVVATPGRLNDILEMRRVRLDQV
SYLVLDEADRMLDMGFEPQIRKIVKEVPTRRQTLMYTATWPKEVRRIAADLLVNPVQVNI
GNVDELVANKSITQYIEVLSYMDKQKRLDQILRSQEPGSKIIIFCSTKKMCDRLAQNLTR
PFGAAAIHGDKSQGERDHVLSQFRTGRSPVLVATDVAARGLDVKDIRVVVNYDFPTGIED
YVHRIGRTGRAGATGEAYTFFCDQDAKHASDLIKVLEGANQQVPTELRDMASRGGGMGKA
RRQWDSGSGGREGGHGGRYDAGYGGRGGGRGGWEVPSSERSGRVYDSDSRDSDRNGDGSR
DTEAPVSFHARSFHETMMQASQRGDRSRSRSPNRGSGWGDRKSRERSRSPSAERYRAPLQ
VPVGRSFHESMMACGRSAGDFREKVGGSYDDCQKDWEKERSPRRWQGDGKSGNRPRANNG
EEEEGMFPEGR
NT seq
2196 nt
NT seq
+upstream
nt +downstream
nt
atggctgctactgcaactgcatcttctgctggtccacgctatgcaccagaggaccccacc
cttcccaaaccttggaaaggcctagttgatggtaaaactggatatctctatttttggaat
ccagagaccaatactacccaatacgagaggcctgttgctatttctcatgggggtactgca
caacataaatcatccgtatctgtaagttcatcagttgagaggccttctcaaagtcaacat
cctgaccgtgatgacaacagaggtaccaatggtggcttgagcaagctttcctctggagag
ggtattcagactgcaagaggaaatgagcattcccgtgatggaacatctgcgcctaaaggt
tatagtgttccagctgctggaagtgacatatctccagatgcctatcgccgtcagcatgaa
atttctgttacaggaggtgatgtgcccccacctttcacatcgtttgaagctactgggttt
ccttcggagattttgagggagatacatcaagctgggtttcctgctccttccccaatacag
gcacagtcctggcccattgcacttcagggccgtgacatagtagctgttgcaaagactggg
tctgggaaaactttgggtttcttgcttcctggctttattcttctaaagcaacgtcggagt
aatcctcaatcaggccctactattttggttttgtcgccaacaagagaattagccacacag
atacaagacgaagctgttaagtttggtagatcttcaaagatatcttgcacgtgtttatat
ggaggcgccccaaaaggccctcaactacgagatctggacagaggagttgatattgttgta
gctacccctggtcgtttgaatgatattttggagatgagaagagttaggctggatcaagtt
tcttacttggtgttagatgaagcggatcgtatgctggacatgggatttgaacctcagata
cggaagattgtgaaggaagtgcctacgcggcggcagacactgatgtacacagcaacatgg
ccaaaggaggtccgcagaattgcagctgatctattggttaatcctgttcaggttaacatt
gggaatgttgatgagcttgttgcgaacaagtctataacacagtacattgaagtcttatca
tatatggataaacaaaagcggctagaccagatcttgagatcccaagagcctggatcaaaa
atcattatcttctgttcaacaaagaaaatgtgtgaccgacttgctcagaatcttacacgc
ccatttggagctgctgcaattcatggtgataaatctcagggtgaaagggatcatgtattg
agccagttccgcactggcaggtcccccgttcttgttgctactgatgttgctgctcggggc
ttggatgtcaaagatatcagggtggtggtcaactatgattttcctactggaatagaggat
tatgtacacagaataggaagaactggtcgggctggtgcgactggtgaggcctacacattt
ttttgtgaccaggatgctaaacatgcttcagatcttattaaagttttagaaggagcaaat
cagcaagtgcctactgaactacgtgatatggcttcccgaggtggtggtatgggaaaggct
aggcgtcaatgggattctggctcaggtggacgtgaaggaggacatgggggacgttatgat
gctggctatggtggacgaggtggaggaaggggtggttgggaagtcccgtcatcggaaaga
agtggacgtgtttacgactcggattcacgtgacagtgatagaaatggtgatggatctcgt
gataccgaggctccagtgagtttccatgctcgtagcttccacgagactatgatgcaggct
tcacagagaggtgatcgaagtcggagcagaagcccaaatagaggttctggatggggtgat
aggaaaagcagggagcgcagtcgtagccctagtgctgaaagatatcgggctcctcttcaa
gtcccagtaggacgcagtttccatgaaagcatgatggcctgtggtagatcagctggtgat
ttcagagaaaaagttggagggtcatatgatgattgccaaaaggactgggaaaaagagaga
tctccacgtagatggcaaggtgatgggaaatctggcaatagaccccgtgctaacaatggg
gaggaggaagaaggtatgtttcctgaagggagatga
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