KEGG   Solanum dulcamara (climbing nightshade): 129874000
Entry
129874000         CDS       T09577                                 
Name
(RefSeq) methyl-CpG-binding domain protein 4-like protein isoform X1
  KO
K10801  methyl-CpG-binding domain protein 4 [EC:3.2.2.-]
Organism
sdul  Solanum dulcamara (climbing nightshade)
Pathway
sdul03410  Base excision repair
Brite
KEGG Orthology (KO) [BR:sdul00001]
 09120 Genetic Information Processing
  09124 Replication and repair
   03410 Base excision repair
    129874000
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03036 Chromosome and associated proteins [BR:sdul03036]
    129874000
   03400 DNA repair and recombination proteins [BR:sdul03400]
    129874000
Chromosome and associated proteins [BR:sdul03036]
 Eukaryotic type
  Heterochromatin formation proteins
   MBPs (metylated DNA binding proteins)
    129874000
DNA repair and recombination proteins [BR:sdul03400]
 Eukaryotic type
  SSBR (single strand breaks repair)
   BER (base exicision repair)
    DNA glycosylases
     129874000
SSDB
Motif
Pfam: Myb_DNA-bind_3 HhH-GPD Ribos_L4_asso_C
Other DBs
NCBI-GeneID: 129874000
NCBI-ProteinID: XP_055805180
LinkDB
Position
11:1206787..1210142
AA seq 651 aa
MCREKEFLIAILYAELVIHEKDLNQLDWAGIVQKLYHQTRKQTSVTEVQTLYKKFRDETK
QFMDLLQVTGYEWNPNNNKVTCKDDLWEHINSVHRGEKHFRNKGLLHYNLLRDIFCNDFG
TGEHANYSVNSGYLSESDGRERGRQDDKGKKRKKQREKYCEEEGKIVKSSPYFKKVPDYE
KTGSSKFIVAISDLYMKPIKSECMVTVETHQRSNKRKRKRNAKCDDDEKSGYDMREMDAK
PVLIGPPDTKLEDISVKENKQSGYFDEGCTTVASITVVHGDNAVANSTDNLFSQFAYKGG
NFSSGKRRTEDGKIALKSHVCGPLSRRLNTMQKSSESGFMIGNVSHLSHPEGGCGPKAGK
TVFEPCLSQNQINEKMIGQKARVVSPYFVNSRNGETEMKIGRSVECVTKGNGKSDKKSRT
KVRVVSPYFANSTVGEEIKVGKDRSNPLKNFLNGRKVSPYFQNAHREKKKSRKGSKRRKP
CLSASQKRDEAYLRRSEDNTWVPPRSPFNLLQENHAHDPWRVLVICMLLNCTTGVQVKRV
VEEFFTLCPNAMAATEVAVGDIEKLIRPLGLYTKRSLAIPRLSQEYLGKTWTHVTQLHGI
GKYAADAYAIFCTGKWDQVHPNDHMLTKYWEFLHANGSARGCNMYLPEDDA
NT seq 1956 nt   +upstreamnt  +downstreamnt
atgtgtagggagaaggagttccttatcgcaatcctctatgcagaattggtgattcatgag
aaagacttgaaccaacttgactgggcaggaattgttcaaaaattgtatcatcaaacacgc
aaacaaactagtgtaacggaagtgcagacattgtacaaaaaatttagagatgagacaaag
caattcatggatctgttacaagttactggttatgaatggaacccaaataacaacaaagta
acttgtaaggatgacctgtgggaacatattaactccgtccatcgtggtgagaagcacttt
agaaacaaaggccttttacattataatctgttaagggatatattctgcaatgattttggc
actggtgaacatgccaattacagtgtcaattctggatatctttcggaatcagacggaaga
gaaagaggaaggcaggatgataaaggaaagaaaaggaagaagcagagggagaagtattgt
gaagaggaaggaaaaattgtaaaatcttccccatattttaaaaaagtgcccgactatgag
aagactggaagtagtaaattcattgtagctatttctgatttgtatatgaagcctatcaag
agtgagtgcatggttactgtggaaacacatcagaggagtaacaaaaggaaaagaaagagg
aatgctaaatgtgatgatgatgagaaatcgggatatgatatgagggaaatggatgccaaa
ccagtcctgattggtcctcctgatacaaaattggaagatattagtgtgaaggagaataaa
caatctggttattttgatgagggatgtactactgttgcttccattacagttgttcatggt
gataatgcagtggctaatagtactgataatctcttttcacagtttgcatacaaaggtgga
aactttagttccggtaaaaggagaactgaagatgggaagattgccctcaagtcacatgtt
tgtggccctctctctcgaaggctcaacacaatgcaaaagtcttcagaatctggctttatg
attggaaatgtgagtcatttatcacatccagaaggaggttgcggacctaaagctggtaaa
actgtgtttgaaccttgcctatctcagaatcagatcaatgagaagatgattggacagaaa
gcacgagtggtttccccttactttgtgaactcaaggaatggagaaactgaaatgaaaata
ggaaggtctgtagaatgtgtgacgaaaggaaatggaaaaagtgacaaaaaatcacgaacc
aaagttcgagtggtttccccttactttgctaactcaacagtgggagaagaaataaaggta
gggaaggatagatcaaaccctttgaagaactttctcaacggaagaaaggtttctccctac
tttcagaatgcacatcgtgaaaagaagaagagtagaaaaggttcaaaaaggcggaaacct
tgtctctctgcttcccagaaaagagacgaggcttatttaaggaggagtgaagataacaca
tgggtacctccgcgatccccatttaatctcctccaagaaaaccatgctcatgatccttgg
agggtgttggttatttgcatgcttctaaattgcaccaccggcgtgcaggttaagagagtg
gtagaagaatttttcactctgtgtccaaatgctatggctgctacagaggttgctgtaggg
gatattgaaaagttgatacggcctttaggattatatacgaagaggtcactggctattcca
cggctctctcaagaatatcttggaaaaacttggactcatgtcacacagctgcatggtatt
ggcaagtatgcagctgatgcatatgcaatattttgtacgggcaagtgggatcaagtacat
ccaaacgatcatatgctaactaaatactgggaattcctgcatgcaaatggctcggcccga
ggatgcaatatgtatttacctgaagatgatgcatag

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