Solanum dulcamara (climbing nightshade): 129874409
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Entry
129874409 CDS
T09577
Name
(RefSeq) probable ubiquitin conjugation factor E4
KO
K10597
ubiquitin conjugation factor E4 B [EC:
2.3.2.27
]
Organism
sdul
Solanum dulcamara (climbing nightshade)
Pathway
sdul04120
Ubiquitin mediated proteolysis
sdul04141
Protein processing in endoplasmic reticulum
Brite
KEGG Orthology (KO) [BR:
sdul00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
04141 Protein processing in endoplasmic reticulum
129874409
04120 Ubiquitin mediated proteolysis
129874409
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04121 Ubiquitin system [BR:
sdul04121
]
129874409
Enzymes [BR:
sdul01000
]
2. Transferases
2.3 Acyltransferases
2.3.2 Aminoacyltransferases
2.3.2.27 RING-type E3 ubiquitin transferase
129874409
Ubiquitin system [BR:
sdul04121
]
Ubiquitin ligases (E3)
U-box type E3
129874409
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Ufd2P_core
U-box
Motif
Other DBs
NCBI-GeneID:
129874409
NCBI-ProteinID:
XP_055805669
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All DBs
Position
11:59758386..59767838
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AA seq
1040 aa
AA seq
DB search
MATTKPQRTPAEIEDIILRKILLVSLVDSMESDARAVYLEMTAAEILSEGKELRLSRDLM
ERVLIDRLSGNFVSAEPPFQYLVNCYRRAHEEGKKIASMKDKNVRAEMELVVKQVKRLAV
SYCRIHLGNPDMFPNWDMTPANVSLLLPLLFSEVSSSVDVFGGGSGSGGVSSPPGFLDEL
FKDGDFDSMDPILKQLYEDLRGTVLKVSALGNFQQPLRALLFLVKYPVGAKSLVNHPWWI
PNSVYMNGRVIEMTSILGPFFHVSALPDHTIFKSQPDVGQQCFSESATRRPADLLSSFTT
IKTVMNNLYDGLAEVLMSLLKNSTIRENVLGYLAAVINKNSSRAQLQADPLSCASSGMFV
NLSAVMLRLCEPFLDANLTKRDKIDPQYVFSSTRLELRGLTAMHASSEEVSEWINQNNPG
KVDVSKEGSDGENRLLASQEATSSGNASGGPSILNHNNPISSSSDKARYPFICECFFMTA
RVLNLGLLKAFSDFKHLVQDISRCEDNLSTMKTMLEQAPSPQLQQEISRLEKDLESYSQE
KLCYEAQILRDGGLLQRALSFYRLMVVWLVGLVGGFKMPLPSPCPMEFASMPEHFVEDAM
ELLIFASRIPRALDGVLLDDFINFIIMFMASPEYIRNPYLRAKMVEVLNCWMPRRSGSTA
TSTLFEGHQLSLEYLVKNLLKLYVDIEFTGSHTQFYDKFNIRHNIAELLEYLWQVPSHRN
AWRQIAKEEEKGVYLNFLNFLINDSIYLLDESLNKILELKELEAEMSNTAEWERRPAQER
QERTRLFHSQENIIRIDMKLANEDVSLLAFTSEQITVPFLLPEMVERVASMLNYFLLQLV
GPQRKSLSLKDPEKYEFRPKELLKQIVKIYVHLARGDKENIFPSAIIRDGRSYSDQIFSA
AADVLRRIGEDMRVIQEFIDLGAKAKIAASEAMDAEAALGDIPDEFLDPIQYTLMKDPVI
LPSSRITVDRPVIQRHLLSDSTDPFNRSHLTADMLIPDTELKAKIEEFIRSHALQKPGED
LNLQHTKTTIQTTDTSNLIK
NT seq
3123 nt
NT seq
+upstream
nt +downstream
nt
atggcgactactaaaccacagaggacgccggcggagatcgaggacataattcttcggaaa
atcttacttgtatcacttgttgattcaatggaaagtgatgcacgcgctgtgtatttagag
atgacggcggcggagattctaagcgagggcaaagaattaaggttgtctagggatttgatg
gagagggttttaatcgatcgactttcaggcaattttgtatcggcggaacccccttttcag
tatttggtcaactgttatcgtcgggcacacgaagaggggaagaagattgcgtccatgaag
gataagaatgttagggctgagatggaattggtggtcaagcaagtaaagagacttgctgta
tcatactgtcggatacatttagggaatcctgacatgtttcccaactgggatatgacacca
gcgaatgtatctctgttgcttcctttgttgttttcagaggtttcaagttctgtggatgtg
tttggtgggggtagtggcagtggaggagtgtcaagtccacctggttttttggatgagtta
tttaaggatggagattttgatagtatggacccaatactgaagcagttgtatgaggatttg
agagggactgtgctaaaggtttcagctttgggtaattttcagcagcctcttagagcttta
ttatttttggttaagtatccagtaggtgccaagtctctggtcaatcatccttggtggatt
ccaaatagtgtttatatgaatggaagagttatcgagatgacaagcattttgggtcctttc
tttcatgtcagtgcattgcctgaccatacaatcttcaagagtcagccggatgttggccag
cagtgtttctcggaatctgcaacacgtcgtcctgctgatctcctatcttctttcacaact
atcaaaactgttatgaataacttgtatgatggcttggctgaagtccttatgtctcttctg
aaaaattcaaccattcgtgaaaatgtccttggatatcttgcagcagttataaacaaaaat
tcgtcaagggcacagttgcaggctgatccattatcttgtgctagttcaggcatgtttgta
aacctcagtgctgttatgcttcggctctgtgaacctttcttagatgccaatttgacaaaa
cgcgacaagatcgatccccaatatgtgttttctagcacccgtctggaactgagggggttg
actgctatgcatgcatcatcagaagaagtctctgaatggataaatcaaaataatcctggg
aaagttgacgtctctaaagaaggcagtgatggggaaaatcggttgttggcatctcaggaa
gctacaagctccgggaatgcttctggtggaccttcaattctcaaccataacaacccaata
tcaagtagtagtgataaagctagataccccttcatatgtgaatgcttcttcatgactgca
cgggtgctgaacctgggcctcctaaaagcattttcagattttaagcatcttgttcaggac
atttcaagatgcgaagataatttgtctaccatgaaaaccatgctagaacaagcaccatcg
ccacagttgcagcaggaaatatctcgcttggaaaaagatcttgagtcttattcacaggag
aaattatgctatgaagcccaaatattaagggatgggggacttctccagcgtgcattatcc
ttctacaggttgatggttgtttggctggtcgggcttgttggtggttttaagatgccctta
ccttccccttgccctatggaatttgcatctatgcctgagcacttcgtagaagatgccatg
gagctgctaatatttgcttctcgaattcctagagctttggatggtgtcttgctggacgac
ttcattaatttcattatcatgttcatggcaagtccagaatatatcagaaacccttacctt
agagcaaagatggttgaagtcctaaactgttggatgccccgcagaagcggttccactgcg
acgtctactttgtttgaggggcatcaactatctctggagtaccttgtgaaaaatcttttg
aagctttatgttgacattgaatttacaggttcccacacgcagttctatgataaatttaat
atccgccacaacattgctgaactacttgaatatctttggcaagttccaagtcaccggaat
gcatggagacagattgccaaggaggaggagaagggtgtttatttgaatttcttgaacttc
ttgattaatgatagcatctatcttctcgatgaaagtcttaataaaattcttgaactaaaa
gagctggaagctgaaatgtctaacacagcagaatgggagagaagaccagctcaagaaagg
caggagagaacccggttgttccattcacaagagaatataattcgaattgatatgaagttg
gcaaatgaagatgtgagcctgttagcatttacttcagaacaaattactgtcccttttctt
cttcctgagatggtggaaagagttgctagcatgttgaattacttcttacttcagctggtg
ggtccacaaagaaaatctcttagcttgaaagaccctgaaaagtatgagttccgtccgaaa
gagttgctgaaacagattgtgaaaatatatgtgcatttagcgagaggagataaggagaat
atctttccatctgcaattataagagatggtcgatcgtacagtgatcagatatttagtgct
gcagctgatgtccttagaagaattggtgaagacatgagggtcatacaagagttcatcgac
cttggtgcaaaggccaagattgcagcttcagaagcaatggatgctgaggctgctcttgga
gacattcctgatgaattccttgatccaatccaatatactttaatgaaggatcccgtcatt
cttccctcttcaaggataacagtggaccggcctgttattcagcggcaccttcttagtgat
agtacagacccgtttaaccggtctcatctaactgcggacatgttgattcccgacactgag
ttgaaggcgaaaatcgaagagttcatccggtcccatgcactgcagaagcctggggaggat
ttgaatttgcaacacacaaaaacaaccatacaaacaacggatacttcaaatttgattaag
tag
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