Solanum dulcamara (climbing nightshade): 129874619
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Entry
129874619 CDS
T09577
Name
(RefSeq) uncharacterized protein LOC129874619 isoform X1
KO
K12816
pre-mRNA-processing factor 17
Organism
sdul
Solanum dulcamara (climbing nightshade)
Pathway
sdul03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
sdul00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
129874619
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
sdul03041
]
129874619
Spliceosome [BR:
sdul03041
]
Complex C
Other components
Step II factors
129874619
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
WD40
WD40_Prp19
WD40_CDC20-Fz
WDR55
WD40_WDHD1_1st
Beta-prop_EML_2
EIF3I
WD40_MABP1-WDR62_2nd
Beta-prop_WDR90_POC16_2nd
Beta-prop_CAF1B_HIR1
Beta-prop_TEP1_2nd
Beta-prop_EML
WD40_RFWD3
Beta-prop_RIG_2nd
ANAPC4_WD40
Beta-prop_WDR75_1st
Beta-prop_EIPR1
Beta-prop_IFT122_1st
WDR90_beta-prop_4th
Beta-prop_DCAF4
Beta-prop_SPT8
Beta-prop_TEP1_C
WD40_MABP1-WDR62_1st
WD_LRWD1
eIF2A
Beta-prop_NWD2_C
Beta-prop_Vps41
Beta-prop_SCAP
Motif
Other DBs
NCBI-GeneID:
129874619
NCBI-ProteinID:
XP_055805906
LinkDB
All DBs
Position
11:complement(48665812..48671154)
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AA seq
589 aa
AA seq
DB search
MDLLQSYADDEIAESPPQNPNSQSSDQNPSPDSSPIRMLPSKSAAPNVDDTMLALTVAGG
AARAQSKPLDPTQHLVGFNPTYEQLWAPIYGPAHPYAKDGLAQGLRNHKLGFVEDASIEP
FVFDEQYNTFQKYGYAFDPSENSYIGDLDKMKECDAISVYNIPQHEQKKRKLEKKKEKME
EEDGDEQDVDMTEVENPSTDMWLMRNRKSPWAGKKEGLQVELSEEQKKYAEEYAKKKGEE
RGGDRDKAEPMVEKSTFHGKEEKDYQGRSWIAPPKDAKAANDHCYIPKRLVHTWSGHTKG
VSAIRFFPKHGHLILSAGMDTKVKIWDVYNSGKCMRTYMGHSKAVRDIWFSNDGSKFLTA
GYDKYIKYWDTETGQVIQTFTTGKIPYVVRLNPDEDKQNVLLAGMSDKKIVQWDINSGQI
TQEYDQHLGAVNTITFVDNNRRFVTSSDDKSLRVWEYGIPVVIKYISEPHMHSMPSISPH
PNGNWIAAQSLDNQILIYSTRERFQLNKKKRFAGHIVAGYACQVNFSPDGRFVLSGDGEG
RCWFWDWKSCKVFRTLKCHEGVCIGVEWHPLEQSKVATCGWDGLIKYWD
NT seq
1770 nt
NT seq
+upstream
nt +downstream
nt
atggatctcttacaatcctacgccgacgatgaaatcgctgaatcgccgccacaaaaccct
aattcccaatcttccgaccaaaatccttcgccggattcgtccccaatccgcatgcttcca
tctaaatccgccgcccccaatgtcgacgacaccatgctagccctaacagttgccggcggc
gctgccagagctcaatccaaaccccttgacccgacccagcacctcgttggattcaaccca
acgtacgaacaactatgggcaccaatttacggcccagctcacccgtacgcaaaggacggg
ttagctcaaggactcagaaatcacaagctagggttcgtcgaggacgcgtccattgaaccc
tttgtattcgacgagcagtacaatacttttcagaagtatgggtacgcttttgatccctct
gaaaatagctacatcggtgatttggataaaatgaaggaatgtgatgcaatttctgtgtat
aacataccacagcatgaacagaagaagaggaaattagagaaaaagaaggaaaaaatggag
gaggaggacggtgatgagcaggacgtggatatgacggaagttgaaaatccgtccacagac
atgtggttgatgaggaacaggaagagtccatgggctggcaagaaagaagggttgcaagtg
gaattatctgaggagcagaaaaagtatgctgaagagtatgctaagaagaagggtgaagaa
agaggtggtgatagagataaggcagagccgatggttgaaaagagcacatttcatggtaaa
gaggaaaaggattatcagggcaggtcttggattgctccaccgaaggatgcaaaggctgct
aatgatcattgttatataccaaagagattggttcatacttggagtggacacacgaaaggg
gtttcagctattaggtttttccctaagcatggtcatttgattttgtcagctggcatggat
acaaaggtgaagatttgggatgtttacaattccggtaaatgtatgaggacttacatgggg
cattcgaaggcagttagggatatttggtttagcaatgacgggtcaaagtttttaacagct
gggtatgataagtacatcaagtattgggatacagaaacaggacaagtaattcagacattc
acaacgggtaagataccctatgtggtgaggcttaatcctgatgaggataagcagaatgta
cttttggctggtatgagtgataagaagattgtgcagtgggatataaatagtggacagatc
acacaagaatacgatcaacatctgggggcagttaatacaattacctttgtggataataat
aggaggtttgtgacctctagtgatgataaatcattacgtgtttgggaatatggtattcca
gttgttattaagtatataagtgaaccccatatgcattccatgccatctatttctccccat
ccaaatgggaattggattgcagcacaaagtttggataaccagattcttatttatagcacg
cgagagagatttcagctgaataaaaagaaaagatttgctggacacatcgtcgctggttat
gcctgccaggtcaatttctcacctgatggacggtttgtcttgtcaggagatggtgaaggc
agatgctggttttgggattggaagtcgtgtaaggtcttcagaactctcaagtgtcatgaa
ggggtctgtattggtgtagagtggcatcctctggaacaaagtaaagttgctacttgtggt
tgggatggtttgatcaagtactgggactag
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integrated database retrieval system
