KEGG   Solanum dulcamara (climbing nightshade): 129874836
Entry
129874836         CDS       T09577                                 
Name
(RefSeq) protein ANTHESIS POMOTING FACTOR 1
  KO
K14962  COMPASS component SWD2
Organism
sdul  Solanum dulcamara (climbing nightshade)
Pathway
sdul03015  mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:sdul00001]
 09120 Genetic Information Processing
  09122 Translation
   03015 mRNA surveillance pathway
    129874836
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:sdul03019]
    129874836
   03036 Chromosome and associated proteins [BR:sdul03036]
    129874836
Messenger RNA biogenesis [BR:sdul03019]
 Eukaryotic type
  mRNA processing factors
   3' end processing
    Cleavage and polyadenylation specificity factor (CPSF) complex
     129874836
Chromosome and associated proteins [BR:sdul03036]
 Eukaryotic type
  Histone modification proteins
   HMT complexes
    COMPASS/SET1 complex
     129874836
    COMPASS/SET1 complex (yeast)
     129874836
SSDB
Motif
Pfam: WD40_Prp19 WD40_WDHD1_1st WD40 WD40_CDC20-Fz Beta-prop_EML_2 EIF3I WDR55 Beta-prop_CAF1B_HIR1 ANAPC4_WD40 Beta-prop_WDR90_POC16_2nd NBCH_WD40 Beta-prop_TEP1_2nd WD40_MABP1-WDR62_2nd Beta-prop_TEP1_C Beta-prop_SPT8 WD40_MABP1-WDR62_1st Beta-prop_EML Beta-prop_IFT122_1st Beta-prop_Vps41 Beta-prop_NUP159_NUP214 Beta-prop_SCAP Beta-prop_VPS8 PQQ Beta-prop_WDR75_1st eIF2A Beta-prop_DCAF4 Beta-prop_IFT140_1st KNTC1_N VPS11_N Beta-prop_WDR35_TULP_N PQQ_2 PEP5_VPS11_N Cytochrom_D1 BBS1 DUF5812
Other DBs
NCBI-GeneID: 129874836
NCBI-ProteinID: XP_055806184
LinkDB
Position
11:53165833..53174568
AA seq 332 aa
MAGGQTEREDKVSLETTEEILQSMEVGMTFRDYSGRISSMDFHKTSNFLVTASDDESIRL
YDVANATCLKTINSKKYGVDLVSFTSHPTTVIYSSKNGWDESLRLLSLHDNKYLRYFKGH
RDRVVSLSLSSRKEYFISGSLDRTVLLWDQRAEKCQGLLRVQGRPATAYDEQGLVFAIAF
GGYIRMFDARYFEKGPFEIFSVGGDVSDANIVKFSNDGRLVLLTTMDGHIHVLDSSRGTL
LSTYNVQPVPSSSTLEASFSPEGMFVISGSGDGSVYAWSVRSGKEVASWMSTDTEPPMIK
WAPGSLMFVTGSSELSFWIPDLSKLAAYVGRK
NT seq 999 nt   +upstreamnt  +downstreamnt
atggcaggtggacaaactgagagagaagacaaggtctcactagagaccactgaagaaatc
ctacagagcatggaagtcggcatgacatttcgcgattatagtggtagaatcagttcaatg
gatttccataagacatcaaattttttggtgacagccagtgatgatgagtccatacgttta
tatgatgttgcaaatgcaacatgtttgaagactattaatagcaaaaagtacggggtcgat
ctggttagcttcacttctcatccaacaactgtaatatactcctccaagaatggatgggat
gaatctctacgacttctttcattgcatgacaacaagtacttgcggtatttcaagggtcat
cgtgacagggtcgtctctcttagcttaagctctagaaaggagtattttatatctggctca
cttgatcgaactgttctactttgggatcaaagagctgagaaatgccagggccttcttcga
gtgcaaggaagaccagctactgcttatgatgagcaaggccttgtatttgctattgctttt
ggaggatatataaggatgtttgatgcacgctattttgaaaagggaccttttgaaattttt
tctgttggtggagatgtatctgatgctaacatcgttaagttcagtaacgatgggagactt
gtgcttttgacaactatggatgggcatattcatgtgcttgattcttcccgtggcacactt
ttatcaacatataatgtacagcctgttccaagtagttcaacattggaggcatctttcagt
ccagaaggaatgtttgttatatcaggatcaggtgatggtagtgtctacgcttggagtgtc
cggagcggtaaagaagtagccagttggatgagtacagatactgaaccacctatgatcaag
tgggctccaggaagcttaatgtttgtgaccggttcttctgagctttcattttggatccca
gacttgtcaaaattagcagcttatgtgggaagaaaatag

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