Solanum dulcamara (climbing nightshade): 129875185
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Entry
129875185 CDS
T09577
Name
(RefSeq) DNA damage-binding protein 1 isoform X1
KO
K10610
DNA damage-binding protein 1
Organism
sdul
Solanum dulcamara (climbing nightshade)
Pathway
sdul03420
Nucleotide excision repair
sdul04120
Ubiquitin mediated proteolysis
Brite
KEGG Orthology (KO) [BR:
sdul00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
04120 Ubiquitin mediated proteolysis
129875185
09124 Replication and repair
03420 Nucleotide excision repair
129875185
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04121 Ubiquitin system [BR:
sdul04121
]
129875185
03400 DNA repair and recombination proteins [BR:
sdul03400
]
129875185
Ubiquitin system [BR:
sdul04121
]
Ubiquitin ligases (E3)
Multi subunit type E3
Cul4 complex
Adoptor protein
129875185
DNA repair and recombination proteins [BR:
sdul03400
]
Eukaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
GGR (global genome repair) factors
Cul4-DDB2 complex
129875185
TCR (transcription coupled repair) factors
Cul4-CSA complex
129875185
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Beta-prop_RSE1_2nd
CPSF_A
Beta-prop_RSE1_1st
Motif
Other DBs
NCBI-GeneID:
129875185
NCBI-ProteinID:
XP_055806599
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All DBs
Position
11:20644702..20667005
Genome browser
AA seq
1095 aa
AA seq
DB search
MSVLNYVVTAHKPTNVTHSCVGNFTGPQELNLIIAKCTRIEIHLLTPQGLQCICLQPMLD
VPIYGRIATLELFRPHGETQDLLFIATERYKFCVLQWDTEASEVITRAMGDVSDRIGRPT
DNGQIGIIDPDCRLIGLHLYDGLFKVIPFDNKGQLKEAFNIRLEELQVLDIKFLYGCPKP
TIVVLYQDNKDARHVKTYEVSLKDKDFIEGPWAQNNLDNGASLLIPVPPPLCGVLIIGEE
TIVYCSASAFKAIPIRPSITRAYGRVDADGSRYLLGDHNGLLHLLVITHEKEKVTGLKIE
LLGETSIASTISYLDNAFVFIGSSYGDSQLVKLNLQPDTKGSYVEVLERYVNLGPIVDFC
VVDLERQGQGQVVTCSGAYKDGSLRIVRNGIGINEQASVELQGIKGMWSLRSATDDPYDT
FLVVSFISETRVLAMNLEDELEETEIEGFNSQVQTLFCHDAVYNQLVQVTSNSVRLVSST
SRDLKNEWFAPAGYSVNVATANATQVLLATGGGHLVYLEIGDGVLNEVKYAKLDYDISCL
DINPIGENPNYSHIAAVGMWTDISVRIYSLPDLNLITKEQLGGEIIPRSVLMCSFEGISY
LLCALGDGHLLNFVLSMSTGELTDRKKVSLGTQPITLRTFSSKDTTHVFAASDRPTVIYS
SNKKLLYSNVNLKEVSHMCPFNVAAFPDSLAIAKEGELTIGTIDEIQKLHIRSIPLGEHA
RRISHQEQTRTFALCSVKYTQSNADDPEMHFVRLLDDQTFEFISTYPLDQFEYGCSILSC
SFSDDTNVYYCIGTAYVMPEENEPTKGRILVFIVEDGKLQLIAEKETKGAVYSLNAFNGK
LLAAINQKIQLYKWASREDGGSRELQTECGHHGHILALYVQTRGDFIVVGDLMKSISLLI
FKHEEGAIEERARDYNANWMSAVEILDDDIYLGAENNFNLFTVRKNSEGATDEERSRLEV
VGEYHLGEFVNRFRHGSLVMRLPDSDVGQIPTVIFGTVNGVIGVIASLPHDQYLFLEKLQ
TNLRKVIKGVGGLSHEQWRSFYNEKKTVDAKNFLDGDLIESFLDLSRNRMEEISKAMSVP
VEELMKRVEELTRLH
NT seq
3288 nt
NT seq
+upstream
nt +downstream
nt
atgagtgtattgaactacgtggttacggctcacaagccaacaaacgttacacattcctgt
gttggcaatttcaccggtcctcaagagctcaatcttatcattgcgaaatgtactcgaatc
gagattcatttactcaccccccaaggtttacagtgcatttgtttgcagcctatgttggat
gtgccgatatatgggagaatcgcgacacttgagcttttccgtcctcacggtgaaacacaa
gatctgctattcattgcaacggagcgatataaattctgtgtccttcaatgggatactgag
gcatctgaagttatcacaagagcaatgggagatgtgtcagatcgaataggccgtcccacg
gataatggtcagattggtataatcgatccagactgcagattgattgggctgcatctttat
gatggactatttaaggttattccatttgataacaaaggccaactgaaggaagcttttaac
atcaggctcgaggagcttcaagtcttagatattaaattcttgtacggttgcccaaagcct
acaattgttgttctatatcaggataacaaggatgcccgacatgtcaaaacatatgaggtg
tccttgaaagataaagattttattgaagggccatgggctcagaataatcttgataatgga
gcttctttgctaataccagttcctccaccactgtgtggtgtattgattattggagaagaa
accatcgtttattgcagcgcttctgcttttaaggctatcccaattagaccttctatcaca
agagcatatgggcgggttgatgctgatggttctcgatatttgcttggggatcataatggg
cttcttcacctacttgtaatcactcatgaaaaggagaaagttaccggactcaaaattgag
ctactgggagaaacttctattgcatcaaccatatcatacctagacaatgcttttgttttc
attggctcaagctacggagattcacagcttgtaaagctcaatctccagcctgacactaaa
ggttcgtatgtggaagttctagagagatatgtcaatttgggaccaattgtggacttctgt
gttgttgatctggagagacaaggtcaaggtcaggttgtgacttgctctggagcctataag
gatggatcgcttcgtattgttcgaaatggaattggcataaatgaacaggcatccgtggaa
ctacaagggatcaaaggaatgtggtctcttagatctgctactgatgatccgtatgacaca
ttcttggttgttagcttcattagtgagacacgtgttttggctatgaaccttgaggatgag
ctggaagaaactgagatagaaggcttcaattctcaagtccagaccttgttttgtcatgat
gctgtatacaaccagcttgttcaggttacttcaaactctgttagattggtcagttctacc
tctagagatctgaaaaatgaatggtttgctccagctggctactcggtcaatgttgcaact
gctaatgctactcaggtactattggctactgggggtggccatctggtatacctagaaatt
ggtgacggggtgttgaatgaagtaaaatatgccaagttggattatgacatctcgtgcctg
gacataaatccaattggtgaaaatccaaactacagtcacattgcagcagttggcatgtgg
acagacataagtgtcaggatatattcactccctgacttgaatctcattacaaaggaacag
cttggaggggagataattcctcgttctgttcttatgtgttccttcgaagggatatcttat
ctactttgtgctttgggagatggccatctcttgaattttgtattgagcatgagtactggt
gagctgacagataggaaaaaagtgtctcttgggacccagcccataacacttcgtacattc
tcatctaaagatactacacacgtctttgctgcctccgataggcccacagttatttacagc
agtaacaagaagctgctttatagcaatgtaaatctaaaagaagttagtcatatgtgcccg
ttcaatgttgcagcttttccagacagccttgcaattgcgaaagaaggtgagttaacaatt
ggcactattgatgaaattcaaaagcttcacatccgttcaataccccttggggagcatgca
cgtcgtatcagccatcaagagcagacccggacatttgctctatgcagtgtgaagtatact
cagtcaaatgcagatgatcctgaaatgcattttgtccgcctgttagatgatcaaacattt
gagttcatatcaacatatccccttgaccaatttgagtatggttgttccatactaagctgc
tccttttctgatgatactaatgtgtattattgcattggaactgcatatgtgatgccagag
gaaaatgaacctaccaagggccgaattttagtttttatagttgaagatgggaagctccaa
ctaattgcagagaaggaaactaaaggagctgtctactctctaaatgccttcaatgggaaa
ctgcttgctgcaatcaatcagaagattcaattgtacaagtgggcttcgcgtgaggatggt
ggcagccgagaattgcagacagaatgtggacaccatggccatatattagctctttatgtc
caaacacgtggggattttattgtcgttggtgatttgatgaagtccatttctctgctgatt
ttcaagcatgaggagggtgctatagaggagcgagcccgagactataatgcaaattggatg
tcagctgttgagattctcgatgatgacatatatcttggtgctgagaataactttaacctt
tttacagtcaggaaaaatagtgaaggtgctacagatgaggagcgcagccgtcttgaagtg
gttggtgaataccaccttggtgaatttgttaataggtttagacacggttcgcttgtcatg
cgactgccagattcagacgttggccagatacctaccgtcatatttggcacagtgaatggt
gttataggggtcattgcgtcacttcctcatgatcaatatttatttttggaaaaactgcag
acgaacttacggaaggtgataaagggcgtgggaggactgagccatgagcagtggaggtcg
ttttacaatgagaagaaaactgtagatgctaaaaactttcttgacggagatttgattgaa
tcatttctagatcttagcaggaatcggatggaagagatttctaaagcaatgtccgtgcca
gttgaggaactaatgaagagagtggaagagttgacaaggttgcattag
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