Solanum dulcamara (climbing nightshade): 129875532
Help
Entry
129875532 CDS
T09577
Name
(RefSeq) pre-mRNA-splicing factor prp12 isoform X1
KO
K12830
splicing factor 3B subunit 3
Organism
sdul
Solanum dulcamara (climbing nightshade)
Pathway
sdul03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
sdul00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
129875532
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
sdul03021
]
129875532
03041 Spliceosome [BR:
sdul03041
]
129875532
03036 Chromosome and associated proteins [BR:
sdul03036
]
129875532
Transcription machinery [BR:
sdul03021
]
Eukaryotic type
RNA polymerase II system
Coactivators
SAGA/TFTC/STAGA complex
129875532
Spliceosome [BR:
sdul03041
]
Complex A
U2 snRNP components
U2 snRNP specific factors
129875532
Complex B
129875532
Complex C
U2 SnRNP specific factors
129875532
Chromosome and associated proteins [BR:
sdul03036
]
Eukaryotic type
Histone modification proteins
HAT complexes
STAGA complex
129875532
TFTC complex
129875532
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Beta-prop_RSE1_2nd
Beta-prop_RSE1_1st
CPSF_A
Motif
Other DBs
NCBI-GeneID:
129875532
NCBI-ProteinID:
XP_055806814
LinkDB
All DBs
Position
12:complement(2847896..2859554)
Genome browser
AA seq
1394 aa
AA seq
DB search
MAVSEEESSSSSSAGSSKSRSSASRGASYLAKTVLRGSVVLQVVYGRIRSPTSYDVVFGK
ETSIELVIIDEDGVVQSICEQPVFGIIKDIAVLPWNEKFRVGSPQLLGRDLLVVISDSGK
LSVLRFCNEMHRFFAVTHVQLSSPGNPTDQIGRMLAVDPNGCFIAASAYEDSLALFSSSA
SAGSDIIDKRIFCPTDKQGKIETASGFTSICGTIWSMCFISKVVCQPNKDYNPVLAILLN
RRRSYRSELMLIEWNTKEHSLHVIYQCSELGPLAHHIVEIPHSYGLMLVFRAGDAIVMDI
RDPHNPCFLYRISLNFTSPSVEEQNFVRETIRIPDIIDEEGIYSVAASALLELSDLNKND
PMNIDDDSNVKPGSNFVCSWSWDPGNENNPRMIFCADSGELFLIEFLFDSDGLKVSLSDC
LYKTLPAKALLWVRGGFLAVIVEMGDGMVLKVEEGRLVYRSPIQNIAPILDMSVVDYHDE
KHDQMFACCGMAPEGSLRVIRNGISVEKLLKTAPIYQGITGTWTVKMKLADSYHSFLVLS
FVEETRVLSVGVSFSDVTDFMGFQPDVCTLACGLVDDGLLVQIHQTAVRLCVPITAAHPD
GIDSSSPTFTSWSPDNMTISLGVVGPNLIVVATSSPCFLFILGIRTISARHYEIYQMQHV
KLQDELSCISIPQRRLEQTSFISRTSNTNGVPLDSLPDELDISNTFVIGTHKPSVEVLSF
TSDKGVSVLAVGSITLTNTLGTTVSGCIPQDVRLVLVDRLYVLSGLRNGMLLRFEWPSIS
AVSSLVSPGLQSFDNSCMANCTSSSIFASQNFRTQPTQVSSLLDKTKDFPVYLQLVAVRR
IGITPVFLIPLNDSLDADVIALSDRPWLLQTARHSLSYTSISFPPSTHVTPVCSTECPKG
IIFVAENSLHLVEMVPSKRLNVQKFHFGGTPRKVLYHSDSRLLLVLRTDLSDDLCSSDVC
CIDPLSGSVLSSFKFEPGEIGKCMELVKAGNEQVLVVGTGLSSGPAIMPSGEAESTKGRL
IVLCLEQMQNSDSGSIAFSSRAGSSSQRTSPFREIGGYAAEQLSSSSLCSSPDDNSCDGI
KLEESEAWHLRLGYSTTWPGMVLAVCPYLDRFFLASAANCFYLCGFPNDNGQRVRRVAVG
RTRFMIMTLTAHFTRIAVGDCRDGVLFYSYQEDARKLDQVYCDPVQRLVADCTLMDVDTA
AVSDRKGSLAILSCLNHLEDDSNSPERNLVVTCSFHMGEIAMRIRKGSFSYKLPADDALR
DCQVASNVGDISQNSIMASTLLGSIIIFIPLAREEYDLLEAVQARLAIHPLTAPILGNDH
TEYRCRGSMARAPKALDGDMLAQFLELTSMQQEAVLALPLGAQNTIMFNSKQSPAPITVN
QVVRLLERIHYALN
NT seq
4185 nt
NT seq
+upstream
nt +downstream
nt
atggcggtttcggaggaagaatcatcgtcttcatcatctgccggtagcagcaagtcgcga
tcatctgcttctcgtggtgccagttatttggctaagactgttcttagaggaagtgttgtt
ctccaagtggtttatggccgtatccgctctcctacttcatacgacgtcgtctttggcaag
gaaacatctatagagttggtgattatagatgaagatggagttgtgcaatctatttgtgag
cagcctgtatttggcataataaaagatatagctgtccttccctggaatgagaagtttcgt
gttggaagcccacagcttctgggcagggatctcttggttgtcatttcagattcagggaag
ctgtcagttctcagattttgcaatgaaatgcacaggtttttcgctgtaacacatgttcaa
ctttcgtctcctggaaatcctacagatcaaattggaaggatgttagccgttgatcccaat
ggttgttttattgctgctagtgcatatgaagacagtttggcgcttttctccagctctgct
tcagctggtagtgatataattgataagagaatcttttgtcccactgacaagcaagggaag
atcgaaactgccagtggtttcaccagtatctgtggtaccatatggagcatgtgctttatc
tcaaaagttgtttgccaaccaaataaggattacaatcctgtattggccattcttctcaat
aggaggagatcatataggagtgagctcatgttgatagagtggaatacgaaggagcattcg
ctccatgtaatatatcagtgttctgaactcggaccactagcacatcatatcgtagaaatt
cctcattcttatggactcatgttagtatttcgtgctggggatgctatagtgatggacatt
agagatcctcataacccttgttttctttatcgaataagtttaaattttacatctccttca
gttgaggagcagaattttgtacgagagactattagaattcccgatattatagacgaagaa
ggtatatatagtgttgctgcatctgcattgcttgagctcagcgacttgaataaaaatgat
cctatgaatattgatgatgatagcaatgtaaagccgggttcgaatttcgtgtgctcatgg
agttgggatcctggaaatgagaacaatcctagaatgatattttgtgcggactctggagag
cttttcctgattgaatttttatttgattctgatggcctgaaagtatcactgtctgattgt
ctttacaagactctaccagccaaggcacttttgtgggtgagaggtggatttttggcagtt
attgttgagatgggtgacgggatggtgttaaaagttgaagagggaagacttgtttataga
agtccaatccaaaatatcgcaccaatattagatatgtcggttgtggattaccatgatgag
aaacatgatcaaatgtttgcatgctgtgggatggcacctgaaggatctttaagagttata
cgtaatggcatcagtgtagagaaattgttgaaaactgctcccatttatcagggtattact
ggaacttggactgttaaaatgaaacttgctgattcctatcattctttccttgtactgtct
tttgttgaagagaccagggtgctatctgttggtgtgagcttttctgatgtaaccgacttc
atgggtttccaacccgatgtttgcacgttggcatgtggtcttgtggatgatggtctgctg
gtgcaaatccaccaaactgctgtgagactgtgtgtacctattactgctgcacatccagat
ggtattgattcgtcatcaccaactttcacgtcgtggtcccctgataatatgacaataagc
ctgggagttgttgggcctaatttgatagttgttgcaacgtccagtccatgtttcttattc
attcttggcatcaggacaatatcagcccgtcattatgaaatataccagatgcaacatgtg
aaattgcaagatgaactctcctgcatctctattccccaaagacggcttgagcaaacatct
tttatctctagaactagtaatacaaatggagttcctctggattctcttccggacgaattg
gacatcagtaacaccttcgttattggtacacataagccttctgtagaagttctatcattt
acttctgataagggcgtgagtgttcttgctgtagggtctataaccttaacaaacactctt
ggaacaactgtaagtggatgcatccctcaagacgtaagacttgtactcgtcgaccggctt
tatgttctttcaggattgaggaatggtatgctactcagatttgagtggccttctatctcg
gcagtttcctcactagtctcacctggccttcagagttttgacaattcttgtatggctaat
tgcactagttcctcaatttttgcatctcagaattttagaactcaacctacacaagtgtcc
agtttattggacaagacgaaggattttcctgtttatctgcagttagttgcagttcgtcgg
attggcatcactcctgtttttttgattccattaaatgattctcttgatgctgatgtgatc
gctttaagcgatagaccctggctattgcaaactgcaaggcatagcctctcgtatacttca
atatcttttccaccttccacacatgttactccagtctgttcaactgaatgtcccaaggga
attatctttgttgctgaaaacagtcttcatttggttgaaatggtgcctagtaaacggctt
aatgtgcagaaatttcattttggcggcactcctcgaaaggttctatatcatagtgacagc
aggttgttgcttgtattaaggactgatctcagtgatgatttatgttcatctgatgtctgc
tgcatagatcctctcagtggatcagtgttgtcatcctttaagtttgagcctggggagata
ggaaaatgcatggagttggtaaaagccggaaacgaacaagttcttgttgttggaactggt
ctctcttctggtccagctataatgcctagtggtgaagctgaaagtacaaagggccgtcta
atagttctttgcctcgagcaaatgcaaaactctgatagtggatcaattgcattttcttcg
agggctggatcatcttctcaacggacgtcacctttccgtgagattggtgggtatgccgct
gaacagctgtctagcagtagtctctgtagcagtcctgacgataacagctgtgacgggatt
aagcttgaggaaagtgaagcatggcacttaagattaggttattcaaccacttggcctgga
atggtgcttgcagtctgcccgtatcttgatcgttttttcttggcctctgcggctaattgt
ttctatctttgtggttttccaaatgataatggccaaagagtcagacgcgtagcagtaggg
agaacaaggttcatgatcatgactcttacagcacacttcactagaattgctgttggcgat
tgtcgtgatggtgtcctcttctactcatatcaagaggatgcaagaaaactagatcaagtt
tactgtgaccctgtccagaggttagttgctgattgcactcttatggatgtagacacagct
gccgtttcagatcgaaaggggagtctagccattttatcatgtctgaatcacttggaagat
gattcgaatagtccagaacgcaatctagttgtaacctgttcattccacatgggcgagata
gctatgagaattcgaaaggggtcattctcctataagcttccagctgatgatgcacttagg
gactgtcaagttgccagcaacgtcggtgacatatcacaaaatagtatcatggctagtaca
cttttagggagcataattattttcattcctcttgctagggaggaatatgatctcttagaa
gcagtacaggctaggcttgccatccatccactgactgctcctatattgggaaatgatcat
actgaatatcgttgtcgtgggagtatggctagggcacctaaagctctggatggtgatatg
cttgctcagttcttggagcttactagtatgcaacaagaagctgtattagcattgcctctt
ggtgcacaaaacacaattatgttcaattcaaagcaatctcctgctccaattactgttaat
caggttgtgcgattgctagaacgcattcattatgccctgaactga
DBGET
integrated database retrieval system
