Solanum dulcamara (climbing nightshade): 129875546
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Entry
129875546 CDS
T09577
Name
(RefSeq) cleavage stimulation factor subunit 77
KO
K14408
cleavage stimulation factor subunit 3
Organism
sdul
Solanum dulcamara (climbing nightshade)
Pathway
sdul03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
sdul00001
]
09120 Genetic Information Processing
09122 Translation
03015 mRNA surveillance pathway
129875546
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
sdul03019
]
129875546
Messenger RNA biogenesis [BR:
sdul03019
]
Eukaryotic type
mRNA processing factors
3' end processing
Cleavage stimulation factor (CSTF) complex
129875546
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Suf
HAT_PRP39_N
HAT_PRP39_C
HAT_Syf1_CNRKL1_N
TPR_14
TPR_19
HAT_Syf1_CNRKL1_C
TPR_15
TPR_16
TPR_2
TPR_CcmH_CycH
TPR_Slam
Mt_ATP-synt_D
TPR_9
DUF1993
Motif
Other DBs
NCBI-GeneID:
129875546
NCBI-ProteinID:
XP_055806833
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Position
12:complement(24308557..24344158)
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AA seq
741 aa
AA seq
DB search
MKDKYNVEAAEILANEALRSPISEAVPIYEQLLSTFPTAAKYWKQYVEAHMAVNNDDATK
QIFSRCLLNCLQIPLWRCYIRFIRKVNDKRGNEGQEETRKAFDFMLNYVGADIASGPVWM
EYIAFLRSLPAQTTQEESQRMTSVRKTYQRAIVTPTHHVEQLWRDYENFENSISRALAKG
LVSEYQPKYNSARAVYRERKKYTDEIDWNMLAIPPSGSSKEEMQWMAWKKLLAFEKANPQ
RIDSASANKRIVFTYEQCLMYLYHYPDIWYEYATWHAKAGSVDSAIKVFQRALKALPDSE
MLRYAYAELEESRGAIQAAKKVYESLFGDGSNASALSHIQFIRFLRRSEGVEAARKYFVD
ARKSPNCTYHVYVAYAMMAFCLDKDAKMAHNVFEAGLKRFMHEPGYILEYADFLYRLNDD
RNIRALFERALSSLPPEESVEVWKKFTQFEQTYGDLASMLKVEQRRKEALSRTGDDGASE
LESSLHDVVSRYSFMDLWPCSSNDLDHLARQEWLARNINKKPDKATLGIEAGSADKTSSG
VSSNTNPPAKVVYPDTSKMTVYDPRQIPGPAALAAPSASGTLPYSGPFSSSGPPNALNDV
LKSLPPAFAAFIVNLPAVEGPSPDADFVISVCLQSNIPSATGKSGTASLPLQSGPAPSTS
DLSDSSKFRPRDRQPGKRKDMDRQEDDESTTIQSQSLPRDVFKIRQLQKTRVGNSSRVTS
SYTGSASYGSALSGDLSGSTG
NT seq
2226 nt
NT seq
+upstream
nt +downstream
nt
atgaaggacaagtacaatgttgaagctgcagaaattcttgccaacgaggcactgcgctcg
ccaatttcggaagcagtgcctatatatgaacaacttctatccacgtttcccacagcggca
aaatactggaagcaatatgttgaggcacacatggcagtaaataatgatgatgcgacaaaa
caaatatttagtcgctgcctcttaaactgtctacagattccactttggcgctgttacatc
cgctttatcaggaaagtcaacgacaagaggggcaatgagggtcaagaagagacaagaaaa
gcttttgatttcatgcttaactatgttggagcggacattgcatcgggtccggtgtggatg
gagtacattgcatttttaaggtctttgcctgctcagaccactcaagaagaatcacaacga
atgacctctgtgaggaaaacataccagagagctattgtcaccccaacccatcatgtggaa
cagctttggagggactatgagaattttgaaaattcaattagtcgagccttggcaaaagga
ctggtttctgaatatcaaccaaaatataacagtgcaagggctgtatatagagaaaggaag
aagtacactgatgaaattgattggaatatgctagcgattccaccctccggctcttccaag
gaggaaatgcaatggatggcatggaaaaaacttctagcctttgagaaagcaaacccacag
aggatagacagtgcttctgctaataaaagaattgtgttcacatatgagcagtgcctcatg
tacctgtatcattatcctgacatatggtatgaatatgccacatggcatgcaaaagctggt
tcagtagactctgctatcaaggttttccagcgagctctgaaagcacttcctgactcggaa
atgctgagatatgcttacgctgaacttgaggaatcacgtggagccattcaggctgccaaa
aaagtatatgaaagtctttttggggatggatccaatgcctcagcgctgtcacatatccag
tttataaggtttttaagaagaagtgaaggagttgaagcagctcgcaaatactttgttgat
gcacgcaagtccccaaattgcacttaccatgtttatgtggcttatgcaatgatggccttt
tgtcttgacaaggatgcaaagatggcgcacaatgtttttgaagcagggttgaaacgcttt
atgcatgagcctggatacatccttgagtatgcagatttcctttatcgtttaaatgacgat
agaaacatcagggcattatttgaacgtgcattgagttcactgccgccagaggaatctgtt
gaggtttggaaaaagttcactcaatttgagcaaacatatggagaccttgccagcatgctg
aaggttgagcagagaaggaaagaagccctttccagaacaggtgatgatggagcatcagag
ttagagagttcgttgcatgatgttgtatcacgctacagtttcatggatctttggccttgc
tcttcaaatgacttggatcatttagcacgtcaagagtggctcgcgaggaacatcaataaa
aaacctgacaaagctactcttggtattgaggcaggttctgcagacaagacttcttctggt
gtttcatccaacacaaatccgcctgccaaggtagtgtatccagatacttcaaaaatgacg
gtttatgatccgaggcaaattccaggtcctgctgcgcttgcagctccatctgcttcaggc
accttgccctattctggtccatttagcagcagtggacctccaaatgcccttaatgatgtt
ttgaaatcgttgccccctgcatttgcagcgttcatagtaaatttgccagctgttgaaggt
ccttctcctgatgctgattttgtaatatctgtatgtttgcaaagcaacattccttcagca
actggaaaatctggaactgcctctctgccgttgcagtcaggccctgctccatctacgagt
gacctctctgattcaagcaaattcaggccgagagacagacagcctggaaagaggaaagac
atggacaggcaagaggatgatgaatcaacgactatacaaagccaatcccttcctagagat
gttttcaagattcgccaattacaaaaaacccgtgttggtaattcgtctcgagttactagt
tcatacactggatcagcatcatacggaagtgctctttcaggagacctctcgggcagcact
ggttga
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