Solanum dulcamara (climbing nightshade): 129875885
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Entry
129875885 CDS
T09577
Name
(RefSeq) polyadenylation and cleavage factor homolog 4-like isoform X1
KO
K14400
pre-mRNA cleavage complex 2 protein Pcf11
Organism
sdul
Solanum dulcamara (climbing nightshade)
Pathway
sdul03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
sdul00001
]
09120 Genetic Information Processing
09122 Translation
03015 mRNA surveillance pathway
129875885
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
sdul03021
]
129875885
03019 Messenger RNA biogenesis [BR:
sdul03019
]
129875885
Transcription machinery [BR:
sdul03021
]
Eukaryotic type
RNA polymerase II system
Other transcription-related factors
Transcription termination factor
129875885
Messenger RNA biogenesis [BR:
sdul03019
]
Eukaryotic type
mRNA processing factors
3' end processing
Pre-mRNA cleavage factor IIm (CFIIm)
129875885
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
zf_PCFS4
CID
Pcf11_C
Motif
Other DBs
NCBI-GeneID:
129875885
NCBI-ProteinID:
XP_055807084
LinkDB
All DBs
Position
12:complement(4969134..4979396)
Genome browser
AA seq
1054 aa
AA seq
DB search
MKSSRRSCLEPGIKKPRLTEDPIGTNRSSNGGSFVPQREANSGSIASRFRVIDSWEDPED
SDSLRGPYQQQQVQLISEYKRALAELTINSKPIITNLTIIAGENLRDAKAIAAIICGNIL
EIPSEQKLPSLYLLDSIVKNIGRDYIKYFAARLPEVFCKAYRQVEPSVHSGMQRLFVTWR
KVFPPPQLQLIEKELGFTTGVNGSSSGTRRDDSKAQQTAHSIHVNPKYLEARQCLQQPTR
AKGSADDITPGDIQKPERAASLGSGRSWVDMSTKCVQKEQLNERIREKTTSAAYGDPEYV
SDLSRGSGFGLRITGEKLKEEQCDKSWYNSANGKILSQRNGLDLKHGVQSLSQNTANSDA
YPQPTHSLANRSSTLMDRSWQSSDEEEYMWDDANSADKDQRASEDSYKSVSGLDNQHPRP
QSMFRLKAESEASVDSLSREDKGQASSENQMSSMWSDEARHLASVRSTPDHPRGYLTSFS
GLSVATNSIAGKSFQSQKGSSHVGTPSLGIAKTANGSRRPMMQPREIQGAAPPSLESAMR
HLPPSPSILTGNFNQVANSLTTEYHTQTESHADPRMSQFSRRSNLDPRNQVSQDTLPMTS
QSAHLVSSQISQTPRYNPSSLMSSLQEEHHVPFPQKIQQESPESEFSIHTQKSIVTQLSG
LADHSGTVPSILPGFESSGQTSMSSLLAAVMKSGVLGSSSSVGTPLNSRDKGPLSSEAGA
QPPLPSGPPIHFLSSGPKTSPSVASAQLDRNASNPPNYSQRNGEQPRLPPDPAPALVDSE
SLQAPNVVNSASNPVARLLSSLVAKGLISASKEESPTSTPPPTPPQTRFQSPPASISSTP
GVYAPVFSPAFSSPKDELSLSKPAAKIHDALPQSNKEEREVAFKPGVIRESNPGVISELL
DDVPHQCGICGLRLKLQVRLDRHLEWHALRNPDGKLLHGERRWYLNSGEWIAGTGSVPHC
GILAGPTGVSSKLSECTEVMVPADEGQCICFLCGQFFEDSYDEESDKWMFKGAVYMNNSS
NESGIQNPIVHKNCISESSQNGMLKYDIKLELKA
NT seq
3165 nt
NT seq
+upstream
nt +downstream
nt
atgaaaagttctcgtagatcatgtttggaaccaggtataaagaagcccagattaaccgaa
gatcctattggaaccaatcgcagttcaaatggagggagttttgtaccacaacgggaggcg
aattcgggctctattgcctcgagatttcgggtaattgacagctgggaagatcccgaggac
agtgattcactccgtggaccttaccaacaacagcaggtgcagcttatcagcgaatacaag
agagctttagctgagctcaccattaattccaagccaataatcacgaacttgactattatt
gctggtgaaaatttgcgcgatgcgaaggcgattgctgctattatctgcgggaacattctt
gagattcctagtgagcaaaagttgccatctctctatcttttggacagtattgtgaagaac
atcgggagggattatattaagtattttgctgccaggctgcctgaggttttctgcaaggct
tatagacaggttgaaccttcggtacactctgggatgcagcgcctttttgtaacctggaga
aaagtattccctcctccgcaacttcaactaattgagaaggagcttggatttacaactggt
gtcaatggctcttcatcaggaacgcgtagagatgattcaaaggctcaacagactgcacat
agcattcatgtaaatcccaagtatttggaggcaagacagtgcctacagcaaccaaccaga
gcaaaaggatcagctgatgacatcactccaggggacatacagaaaccagagagagcagcc
agtctaggttctggaagatcttgggtcgatatgtctactaagtgtgttcagaaagagcag
ttgaatgagcgaatccgcgagaaaactacaagtgcagcatatggagatcctgaatatgtt
tctgatttgtcaaggggttctggctttggattaagaataacaggtgaaaagcttaaggaa
gagcaatgtgataaatcttggtacaattctgcaaatggtaaaatattaagtcaaagaaat
ggcttggaccttaagcatggagtccaaagtctatcccagaatactgcaaactctgatgca
tatccacaaccaacacactcccttgccaatcgaagtagtactttgatggatcggagctgg
cagagttctgatgaagaggagtatatgtgggatgatgccaatagtgcagataaagatcaa
cgggcatccgaagattcatataaatctgtaagtggcttagataatcaacatccaagaccc
caaagtatgtttaggttaaaggctgaaagtgaagcctcggttgactctctttccagagaa
gacaaaggccaagcgtcttccgagaatcaaatgtcatcgatgtggtcagatgaagctagg
catttggcttctgttcggagtactccagatcatccaagaggttatctaacctctttcagt
gggttgtcagtagctacaaactccatagctgggaaatctttccagtcacagaaaggttca
agtcatgtggggacaccaagtcttggaatagcaaagactgcaaatggatccaggcgaccc
atgatgcaaccacgagaaattcagggagctgcccctccatctttagagtcagcaatgcgt
catcttcctccgtctccatcaatcttgactggcaatttcaatcaagtagctaacagtctt
actacagagtatcatacacagacggaatctcatgcagatccaagaatgtctcaattttca
aggaggtcaaatttagatccccgtaaccaagtctcccaggacactctgccaatgacatct
cagagtgctcatttggttagttcacagatatcacagactccaagatataatccatcttcc
ttgatgtcatctcttcaagaagagcatcatgtcccctttcctcaaaaaatccagcaagaa
agccctgagtctgaattttccattcacacccaaaagtcaatagtcactcaactttctggt
ttagctgatcattctggcactgtgccttccattcttcctggctttgaatcctcaggacaa
accagtatgagtagtttgttggctgctgttatgaagagtggagtacttggtagtagctct
agtgtcggcacaccactgaattctcgtgataaggggcctctgtcatccgaagccggtgca
cagcctcctctaccaagtggtcctcctatccatttcttgtcatctggaccaaagacttca
ccttctgttgcgagcgcacaattagacagaaatgcttcaaatcccccaaattattcccag
agaaatggagaacaaccacgactgccacctgaccctgctccagctttggtagatagtgaa
tcattgcaggctccaaatgtggttaattctgcttctaatcccgttgcaagacttttgagt
tcattggtggcaaagggattgatatctgcgtcaaaggaggagtctccaacttcaactcct
ccgcctacacctccacaaactcggttccagagtcctcctgcaagcatcagttcaactcct
ggtgtatatgctccagttttctcaccggctttctcgtctccaaaggatgaactgtctctc
tctaaacctgctgctaaaatccatgatgccttacctcagtccaacaaagaagagagagaa
gttgcatttaaaccaggtgtaattcgggagtccaatcctggtgtcatcagtgaacttctt
gatgacgttccacatcaatgtggcatatgtggtcttcgacttaagctccaagtgcgactt
gatagacacttggaatggcacgcattaaggaatccagatgggaaattgttgcatggtgaa
aggaggtggtatttaaattctggggaatggattgctggaaccggtagcgtcccacactgt
ggtatattggcaggaccaactggagtttctagcaaactatcagaatgcactgaggttatg
gttcctgctgatgaaggtcagtgtatatgtttcttgtgtggtcagttttttgaagattct
tatgacgaagagagtgacaagtggatgttcaaaggagctgtttacatgaacaattcatcg
aacgaaagtggtattcagaatcctatagtccacaagaactgtatatcagaaagttctcaa
aatgggatgcttaagtatgatataaaattggagttgaaagcctga
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integrated database retrieval system
