Solanum dulcamara (climbing nightshade): 129875935
Help
Entry
129875935 CDS
T09577
Name
(RefSeq) pre-mRNA-splicing factor ATP-dependent RNA helicase DEAH7
KO
K12815
pre-mRNA-splicing factor ATP-dependent RNA helicase DHX38/PRP16 [EC:
5.6.2.6
]
Organism
sdul
Solanum dulcamara (climbing nightshade)
Pathway
sdul03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
sdul00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
129875935
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
sdul03041
]
129875935
Enzymes [BR:
sdul01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
129875935
Spliceosome [BR:
sdul03041
]
Complex C
Other components
Step II factors
129875935
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
OB_NTP_bind
HA2_C
Helicase_C
DEAD
HA2_N
AAA_22
AAA_19
SLFN-g3_helicase
AAA_30
nSTAND3
Flavi_DEAD
AAA_24
T2SSE
AAA_16
Sigma54_activ_2
ResIII
AAA_7
ABC_tran
TMEM247
ATPase
Motif
Other DBs
NCBI-GeneID:
129875935
NCBI-ProteinID:
XP_055807156
LinkDB
All DBs
Position
12:complement(246097..257234)
Genome browser
AA seq
1284 aa
AA seq
DB search
MQQRDVEPIDMDKTTITLEPDKTSSGGLFVPGKERVVFKPSERKSLLGLDALAMAKRGGA
TVESGFKVPRERLASVASSIDEDEEASAASGTDDLGHSPSNVSRNNVQRRYRESYASETS
VSGSAVTNEREDAETVVRPHLNENTEVPAASSGSLRSTISRGESVDRERDGSKYRDNYRS
ENRERRRRERRTSREEHHYRDSSRGYEREYDGDDGRKRSRYEGFRRTPGRSEWDDGRWEW
QDTPRRDSRSSSSSRHYEPSPSPKFLGASPDSRLVSPWLGDHTHSAGAASPWDSVAPSPT
PIRASGSSVRSSSSRYGAKSSLIPSSTGSSLSEDGGDDTNGASEDQNQEITESMRLEMEY
NSDRAWYDREEGSTVFEGDGSSAFLGDEASFQKKEVELAKKLVRRDGSKMSLAQSKRLSQ
LTADNAQWEDRQLLRSGAVRGTEVQTEFDDEDERKVILLVHDTKPPFLDGRIVFTKQAEP
IMPIKDPTSDMAIISRKGSALVREIREKQNMHKSRQRFWELAGSKLGDILGVEKSAEQVD
ADTATVGEDGEVDFKGEARFSQHLKKGEAVSDFALSKTLSQQRQYLPIFSVRDDLLQVVR
ENQVVVVVGETGSGKTTQLTQYLHEDGYTNNGIVGCTQPRRVAAMSVAKRVSEEMETELG
DKVGYAIRFEDVTGPSTVIKYMTDGVLLRETLKDPDLEKYRVIVMDEAHERSLNTDVLFG
ILKKVVARRRDFKLIVTSATLNAQKFSNFFGSVPIFHIPGRTFPVNKLYSKTPCEDYVEA
AVKQAMTIHITSAPGDILIFMTGQDEIEATCYALSERMEQLTSSTKQAVPNLLILPIYSQ
LPADLQAKIFQKAEDGARKCIVATNIAETSLTVDGIYYVIDTGYGKMKVYNPRMGMDALQ
VFPISRAAADQRAGRAGRTGPGTCYRLYTENAYENEMLQSPVPEIQRTNLGNVVLLLKSL
KIQNLLDFDFMDPPPQDNILNSMYQLWVLGALNNVGDLTSLGWKMVEFPLDPPLAKMLLM
GEQLECLNEVLTIVSMLSVPSVFFRPKDRAEESDAAREKFFVPESDHLTLLNVYQQWKAN
QYRGDWCNDHFLQVKGLRKAGEVRSQLLDILKTLKIPLTSCGPDWDVVRKAICSAYFHNA
ARLKGVGEYVNCRNGMPCHLHPTSALYGLGYTPDNVVYHELILTSKEYMQCVTAVEPHWL
AELGPMFFSVKDSDTSMLEHKKKQKEEKTAMEEEMEKLRTEQAEAERRNKEKEKEKRAKE
LQQVSMPGLKKGSTTYLRPKRLGL
NT seq
3855 nt
NT seq
+upstream
nt +downstream
nt
atgcagcaaagagatgttgaaccaattgatatggacaagacaacaataacattggaacct
gataagacgagcagtgggggtctttttgttcctgggaaggagagagtagtttttaaacct
tcagagcgaaaatcacttctagggcttgatgccttggcgatggctaaaaggggaggggct
actgtagagagtggatttaaagttccaagggagagacttgcttcagttgcgtcatctata
gatgaggatgaggaggcatctgctgcttctggaactgatgatttgggacatagtccatct
aatgtttcacggaataatgtacagaggaggtatcgtgaatcgtatgctagtgagacatct
gtttcaggaagtgcagtaaccaatgaacgggaagatgctgagacagtcgtgaggcctcac
ttgaatgagaacacagaggttccagctgcctcttctgggagcttacgttctacgatatct
aggggcgagtcagttgaccgtgaaagggatggaagtaaatacagggataattacagaagt
gaaaacagggaaaggagaaggagagagagaagaaccagcagggaagagcaccactatagg
gattcatcacgcggttatgaaagagaatatgatggggatgacggaagaaaaagaagtaga
tatgaaggtttcaggaggactcctggaagatcggaatgggatgatggtagatgggagtgg
caagatacccctcgtcgtgatagtcgttccagtagtagtagcaggcattatgagccttca
ccatcaccaaagtttcttggtgcttcacctgattctcgacttgtttccccatggcttggg
gatcatactcattctgctggagctgcttctccgtgggacagtgtggctccttctccaact
ccaataagagcatctgggtcatcagtaagatcttctagttccagatatggtgcaaagtcc
agtttgattccatcttctacaggaagttctctgtctgaggacggaggagatgacacaaac
ggcgcctctgaagatcaaaatcaagagattactgaaagtatgcgtctagagatggagtat
aattctgatcgtgcctggtatgaccgcgaagaaggtagtacagtgtttgagggggatggt
tcatcagcatttctaggtgatgaggcatctttccagaagaaagaggtggaattggccaaa
aaactggttcgtagagacggaagcaagatgtcacttgctcaaagtaaaaggctatcacag
ctcactgcagacaatgctcagtgggaggatcgccagcttttgagatctggagctgttaga
ggtaccgaggtgcagacggagtttgatgatgaggatgaacggaaggttattcttcttgtt
cacgatacaaagcccccctttttggatgggagaattgttttcaccaagcaagctgagccg
ataatgccaataaaggacccaacatcagatatggccataatttcacgtaaaggttcagct
ctagttcgtgaaatacgtgaaaaacaaaacatgcacaagtctcgtcaaagattttgggag
ctagctggctcaaaacttggagatatccttggtgtggagaagagtgcagagcaggttgat
gcggatactgctacagtgggtgaggatggtgaggttgattttaaaggagaagctagattc
tcacagcacttaaagaaaggggaagctgtcagtgattttgcattatcaaaaacactttca
cagcaaaggcagtatctgcccatcttctctgtgcgagatgacttattgcaggtggttcgc
gaaaaccaggtggtggtagttgttggagaaactggttctggaaagacaacacagctaacc
cagtaccttcatgaagatggctatacaaataatgggattgttggttgcacccaacccagg
cgtgtggcagccatgagtgttgcaaaaagagtcagtgaagaaatggaaactgagcttggt
gataaagttggatatgccattcgttttgaagatgtcactgggccaagtactgttatcaag
tacatgactgatggtgttcttctaagggaaacactcaaagatcctgatcttgaaaaatat
cgtgtaattgtaatggatgaggcccatgagagatcacttaacactgatgtcctttttggc
attcttaagaaagttgtggctaggcgacgtgattttaagcttattgtcacttctgccact
ctgaatgcccagaaattctctaacttctttgggagcgtaccaatatttcacatacctgga
agaacctttccagttaataagttgtatagtaaaaccccatgcgaagattatgttgaagct
gcagttaagcaagccatgaccatccatattactagtgcaccgggtgatatactcatcttc
atgactggtcaggatgagattgaagctacctgttatgcactttcagagcgcatggaacag
cttacctcgtcaacaaagcaagcagtgcccaatctattaattcttcccatatactctcaa
ctgcctgctgatttgcaagcaaaaatattccagaaagctgaagacggggctcgaaaatgc
attgtcgctacaaatattgctgaaacatccttgactgtcgatggaatttactacgtcatt
gatacaggctatggtaaaatgaaggtgtacaatcctcgtatgggtatggatgctctgcaa
gtgttccctattagtcgagctgcagctgaccagcgtgctggtcgagccggtagaactggc
ccagggacttgttaccggctttatactgagaatgcatatgagaatgaaatgctgcaaagc
cccgtgccagagattcaacggacaaatcttgggaatgtggttttgctgctcaagtctctc
aaaattcagaacctgttggattttgattttatggatccacctcctcaggataacatcctc
aactccatgtatcagttgtgggtattaggtgctcttaacaatgttggggatttaacaagc
cttggctggaaaatggtggagttcccattggatcctccccttgctaaaatgctcttgatg
ggagaacaactagaatgcttaaatgaggttctgactattgtttctatgctttcagtgcct
tcagttttctttagacccaaggatagggcagaagaaagtgatgctgctagggaaaagttt
tttgtaccagaatctgatcaccttacactgcttaatgtttaccagcaatggaaagctaat
caatacaggggggactggtgtaatgaccactttttacaggtcaaaggtctgcgcaaggct
ggggaagtaaggtctcaattgctggatatcctcaagacacttaaaattccactcacttcc
tgtggtcctgattgggatgttgtaaggaaagccatctgctctgcctacttccataatgca
gctaggctgaagggagttggggaatatgttaattgccggaatggaatgccttgccacctt
catcccactagtgctctctatggattgggttacactcctgataacgtggtttatcatgag
ctgatcttgacatcaaaggagtacatgcagtgcgtgacagctgtggagcctcactggttg
gctgaactggggccaatgtttttctctgtgaaagattctgatacatcaatgctggaacat
aaaaagaaacagaaagaggagaaaactgccatggaggaagaaatggagaagctgaggacg
gaacaggctgaagctgagagacgaaacaaggagaaagagaaggaaaagagagcaaaagaa
ctgcaacaggtttcaatgcctggtttgaagaaaggctcaactacttatttacgacctaag
aggctcggtctgtaa
DBGET
integrated database retrieval system
