Solanum dulcamara (climbing nightshade): 129875992
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Entry
129875992 CDS
T09577
Name
(RefSeq) THO complex subunit 4A-like
KO
K12881
THO complex subunit 4
Organism
sdul
Solanum dulcamara (climbing nightshade)
Pathway
sdul03013
Nucleocytoplasmic transport
sdul03015
mRNA surveillance pathway
sdul03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
sdul00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
129875992
09122 Translation
03013 Nucleocytoplasmic transport
129875992
03015 mRNA surveillance pathway
129875992
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
sdul03019
]
129875992
03041 Spliceosome [BR:
sdul03041
]
129875992
Messenger RNA biogenesis [BR:
sdul03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
EJC complex
129875992
TREX complex
129875992
Spliceosome [BR:
sdul03041
]
Complex C
Other components
EJC/TREX
129875992
Other splicing related proteins
Spliceosome associated proteins (SAPs)
TREX complex
129875992
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
RRM_1
FoP_duplication
RRM_5
RRM_3
YHR127W_C
RRM_10
Motif
Other DBs
NCBI-GeneID:
129875992
NCBI-ProteinID:
XP_055807243
LinkDB
All DBs
Position
12:9382493..9389394
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AA seq
242 aa
AA seq
DB search
MSNLDVSLDDLIKRNKSSTSRNPRPRTTGSASGSGFGPGPRRRFPNRASNRPAPYSVHAP
ESTWDHDMFAEHAPSSARGAGVSGIETGIKLLISNLDYGVSNEDIKELFSEAGDIKRYSI
HYDKSGRSKGTAEVIFSRRRDAEAAIKRYNNVQLDGKPMKIEFAGTNIAPPALPPIRNRL
YGNPNPAPRSQQRGGGFRRPRGGGRGSMRKDGGRGRGRGENVSAEDLDAELEKYHAEAMQ
TN
NT seq
729 nt
NT seq
+upstream
nt +downstream
nt
atgtcaaatctggatgtgtctctcgatgatttgatcaaaaggaacaaaagttccaccagt
cggaaccctagaccaagaacaactggatctgcatccggatccggattcgggcccggtcca
aggcgtcgcttccccaaccgtgcctccaatcgtccggcaccatattccgttcacgcaccg
gagtctacatgggatcacgacatgtttgcggagcatgccccgtcgtctgcccgaggggct
ggggtatccgggattgagaccggtatcaagctcctcatttccaatttggattatggggtt
tcaaatgaagatatcaaggagcttttctcagaagctggtgatataaagcgttactctatt
cattatgacaagagtggaagatcaaagggaactgcggaagtaatcttttcacgtcgaagg
gatgcagaggcagctatcaagagatacaacaatgttcagctagatgggaagcccatgaaa
attgagtttgctggaacaaatattgctcctcctgctcttcctccaattagaaatcgttta
tatggaaatccaaatcctgctccaagaagtcaacaaagaggtggtggatttagacgtcct
cgaggtggtggtagagggagcatgagaaaggatggtggaaggggcagaggtcgcggtgag
aacgtttctgcagaagatcttgatgctgaattggaaaaatatcacgcagaagcaatgcag
acaaactga
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