KEGG   Solanum dulcamara (climbing nightshade): 129875992
Entry
129875992         CDS       T09577                                 
Name
(RefSeq) THO complex subunit 4A-like
  KO
K12881  THO complex subunit 4
Organism
sdul  Solanum dulcamara (climbing nightshade)
Pathway
sdul03013  Nucleocytoplasmic transport
sdul03015  mRNA surveillance pathway
sdul03040  Spliceosome
Brite
KEGG Orthology (KO) [BR:sdul00001]
 09120 Genetic Information Processing
  09121 Transcription
   03040 Spliceosome
    129875992
  09122 Translation
   03013 Nucleocytoplasmic transport
    129875992
   03015 mRNA surveillance pathway
    129875992
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:sdul03019]
    129875992
   03041 Spliceosome [BR:sdul03041]
    129875992
Messenger RNA biogenesis [BR:sdul03019]
 Eukaryotic type
  mRNA surveillance and transport factors
   Transport factors
    EJC complex
     129875992
    TREX complex
     129875992
Spliceosome [BR:sdul03041]
 Complex C
  Other components
   EJC/TREX
    129875992
 Other splicing related proteins
  Spliceosome associated proteins (SAPs)
   TREX complex
    129875992
SSDB
Motif
Pfam: RRM_1 FoP_duplication RRM_5 RRM_3 YHR127W_C RRM_10
Other DBs
NCBI-GeneID: 129875992
NCBI-ProteinID: XP_055807243
LinkDB
Position
12:9382493..9389394
AA seq 242 aa
MSNLDVSLDDLIKRNKSSTSRNPRPRTTGSASGSGFGPGPRRRFPNRASNRPAPYSVHAP
ESTWDHDMFAEHAPSSARGAGVSGIETGIKLLISNLDYGVSNEDIKELFSEAGDIKRYSI
HYDKSGRSKGTAEVIFSRRRDAEAAIKRYNNVQLDGKPMKIEFAGTNIAPPALPPIRNRL
YGNPNPAPRSQQRGGGFRRPRGGGRGSMRKDGGRGRGRGENVSAEDLDAELEKYHAEAMQ
TN
NT seq 729 nt   +upstreamnt  +downstreamnt
atgtcaaatctggatgtgtctctcgatgatttgatcaaaaggaacaaaagttccaccagt
cggaaccctagaccaagaacaactggatctgcatccggatccggattcgggcccggtcca
aggcgtcgcttccccaaccgtgcctccaatcgtccggcaccatattccgttcacgcaccg
gagtctacatgggatcacgacatgtttgcggagcatgccccgtcgtctgcccgaggggct
ggggtatccgggattgagaccggtatcaagctcctcatttccaatttggattatggggtt
tcaaatgaagatatcaaggagcttttctcagaagctggtgatataaagcgttactctatt
cattatgacaagagtggaagatcaaagggaactgcggaagtaatcttttcacgtcgaagg
gatgcagaggcagctatcaagagatacaacaatgttcagctagatgggaagcccatgaaa
attgagtttgctggaacaaatattgctcctcctgctcttcctccaattagaaatcgttta
tatggaaatccaaatcctgctccaagaagtcaacaaagaggtggtggatttagacgtcct
cgaggtggtggtagagggagcatgagaaaggatggtggaaggggcagaggtcgcggtgag
aacgtttctgcagaagatcttgatgctgaattggaaaaatatcacgcagaagcaatgcag
acaaactga

DBGET integrated database retrieval system