KEGG   Solanum dulcamara (climbing nightshade): 129876013
Entry
129876013         CDS       T09577                                 
Name
(RefSeq) replication factor C subunit 3
  KO
K10756  replication factor C subunit 3/5
Organism
sdul  Solanum dulcamara (climbing nightshade)
Pathway
sdul03030  DNA replication
sdul03410  Base excision repair
sdul03420  Nucleotide excision repair
sdul03430  Mismatch repair
Brite
KEGG Orthology (KO) [BR:sdul00001]
 09120 Genetic Information Processing
  09124 Replication and repair
   03030 DNA replication
    129876013
   03410 Base excision repair
    129876013
   03420 Nucleotide excision repair
    129876013
   03430 Mismatch repair
    129876013
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03032 DNA replication proteins [BR:sdul03032]
    129876013
   03036 Chromosome and associated proteins [BR:sdul03036]
    129876013
   03400 DNA repair and recombination proteins [BR:sdul03400]
    129876013
DNA replication proteins [BR:sdul03032]
 Eukaryotic type
  DNA Replication Elongation Factors
   RFC (replication factor C)
    129876013
  DNA Replication Termination Factors
   ELG1-RFC complex
    129876013
Chromosome and associated proteins [BR:sdul03036]
 Eukaryotic type
  Sister chromatid cohesion proteins
   CTF18-RFC complex
    129876013
DNA repair and recombination proteins [BR:sdul03400]
 Eukaryotic type
  SSBR (single strand breaks repair)
   MMR (mismatch excision repair)
    RFC (replication factor C)
     129876013
  Check point factors
   HRAD17(Rad24)-RFC complex
    129876013
SSDB
Motif
Pfam: RFC_C RCF1-5-like_lid DNA_pol3_delta2 AAA AAA_lid_RFC1 Rad17 Mg_chelatase Sigma54_activ_2 RuvB_N AAA_5 AAA_16 AAA_11 AAA_22 DUF815 AAA_2 AAA_23 AAA_24 ABC_tran nSTAND3 nSTAND6 NB-ARC AAA_29 T2SSE
Other DBs
NCBI-GeneID: 129876013
NCBI-ProteinID: XP_055807270
LinkDB
Position
12:complement(182413..203155)
AA seq 354 aa
MLWVDKYRPKTLDKVIVHQDVAQNLQKLVSEGDCPHLLFYGPPGSGKKTLIMALLRQIFG
PSADKVKVENKIWKVDAGTRTVDVELTTLSSTHHMELNPSDAGFQDRYVVQEIIKEMAKN
RPIDTKGKKGFKVLVLNEVDKLSREAQHSLRRTMEKYSASCRLILCSNSSSKVTEAVRSR
CLNVRINAPMEEEIVNVLEFIAKKEGLQFPQGFATRIVEKSNRNLRRAVLTFETCRVQQY
PFTNNQAIPPMDWEQYVSEIASDIMKEQSPKRLFEVRGKLYELLTNCIPPEVILKRLLLE
LLKKLDSELKHEVSNWAAHYEHRMRLGQKAIFHLEAFVAKFMSIYKSFLISTFG
NT seq 1065 nt   +upstreamnt  +downstreamnt
atgttgtgggttgacaagtaccgccctaaaacattagacaaagtcattgtacaccaggat
gttgctcaaaatcttcaaaaactggtctcagagggagattgtcctcatctgctcttttat
ggccctcccgggtcaggaaagaaaactctgattatggcacttcttaggcagatttttggt
ccaagtgctgacaaggttaaagttgagaacaagatttggaaagttgatgctggtacgcgg
acagttgatgtggagctcacaacattgtcaagcactcaccacatggaattaaatccaagt
gatgccggttttcaggacagatacgttgttcaagaaataatcaaagaaatggccaagaat
agaccaattgacacgaaagggaaaaaggggtttaaagttttagtgctaaatgaagttgac
aagctctcaagagaagcacaacattctcttcgaagaacaatggagaagtacagtgcgtca
tgtcgcctgattctatgctccaacagttcttcaaaggtcactgaagctgttcgctcacga
tgccttaatgtgcgaataaatgcaccaatggaggaagagattgttaatgttttggagttt
attgccaaaaaggaaggacttcaatttccgcagggatttgcgacccgcattgtggaaaag
tcaaataggaatctgaggagggcagttttgacatttgagacttgtcgagttcaacagtat
ccctttacaaacaaccaagctatacctccaatggactgggagcaatatgtttcagaaatt
gcatcagacataatgaaagagcagagccctaaaaggttgtttgaggttagaggaaagtta
tatgagctactaactaattgtattccccctgaagttattttgaagaggctgcttttggag
ctattaaagaaattggattcagagttgaagcacgaggtgtccaactgggctgctcattat
gagcataggatgcgcctcggacagaaggctatatttcatcttgaagcatttgtggccaaa
ttcatgagcatctacaagagtttccttatttcaacatttggctaa

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