Solanum dulcamara (climbing nightshade): 129876059
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Entry
129876059 CDS
T09577
Name
(RefSeq) LOW QUALITY PROTEIN: THO complex subunit 2-like
KO
K12879
THO complex subunit 2
Organism
sdul
Solanum dulcamara (climbing nightshade)
Pathway
sdul03013
Nucleocytoplasmic transport
sdul03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
sdul00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
129876059
09122 Translation
03013 Nucleocytoplasmic transport
129876059
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
sdul03019
]
129876059
03041 Spliceosome [BR:
sdul03041
]
129876059
Messenger RNA biogenesis [BR:
sdul03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
TREX complex
129876059
Spliceosome [BR:
sdul03041
]
Complex C
Other components
EJC/TREX
129876059
Other splicing related proteins
Spliceosome associated proteins (SAPs)
TREX complex
129876059
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Tho2
THOC2_N
Thoc2
LIM_bind
FlxA
Motif
Other DBs
NCBI-GeneID:
129876059
NCBI-ProteinID:
XP_055807339
LinkDB
All DBs
Position
12:56043376..56099022
Genome browser
AA seq
1859 aa
AA seq
DB search
MSLSPLEYLYFTEDSIKELKNGNTSFKFSQPLPTLRFLYELCWVMVRGELPFQKCKMALE
CVEFVDYASQEELGSSLADIVTQLAQDLSLPGENRQRVNKLAKWLVESALVPLRFFQERC
EEEFLWESEMIKIKAADLKSKEVRVNTRLLYQQTKFNLLREESEGYAKLVTLLCQIPEGS
TRNASAATVGIIKSLIGHFDLDPNRVFDIVLECFERQPGNSIFLDLIPIFPKSHASQILG
FKFQYYQRLEVNDPVPSELYQLTALLVKRDFIDVDSIYAHLLPKEGDAFDHYNAFSAKRL
DEANKIGRINLAATGKDLMDEEKQGDVTVDLYAALDMETEAVAERSSELENSQPLGLLMG
FLEVDDWYHAHVLFDRLSHLNPAEHVQICDGLFRLIEKSISEPNDLVCKMQLLGSLPGVV
TDNSMEVANSSSNRSYINLRKELFEMLSSVGPHLYRDTLLLQKVCRVLRGYYICAHELVT
SGEAGFISQTVTIGDRTPRMHLKDARSRIEEALGGCLLPSLQLIPANPAVGLEIWELMNL
LPYEVRYRLYGEWEKDDDQFPMLLAARQTAKLDTRRILKRLAKENLKQLGRMVAKLAHAN
PMTVLRTIVHQIEAYRDMITPVVDAFKYLTQLEYDILEYVVIERLAQSGREKLKDDGLNL
SDWLQSLASFWGHLCKKYPSMELRGLFQYLVNQLKKGNGIELVFMQELIQQMANVHYTEN
MTEEQLDAMAGSDTLRYQATSFGITRNNKALIKSTNRLRDALLPKDEPKLAIPLLLLIAQ
HRSLVVINAEVPFIKMVSEQFDRCHGALLQYVEFLSSAVTPTAAYAVLIPALDELVHVYH
LDPEVAFLIYRPVMRLFRCQRNSDVFWPSDSDEAVSAANAEKESERSDSSACLLLDLGSS
WKPISWTDLLDTIKTMLPSKAWNSLSPDLYATFWGLTLYDLHVPRSRYESEIGKQHAALK
ALEELSDNSSSAITKRKKDKERIQESLDRLTMELQRHEEHVTSVRRRLTREKDTWLSSCP
DTLKINMEFLQRCIFPRCTFSMPDAVYCAVFVNTLHSLGTPFFNTVNHIDVLICKTLQPM
ICCCTEYEVGRLGRFLYETLKMAYYWKGDESIYERECGNMPGFAVYYRYPNSQRVTYGQF
IKVHWKWSQRITRLLIQCLESTEYMEIRNALILLTKISSVFPVTRKSGINLEKRVAKIKS
DEREDLKVLATGVAAALASRKPSWVTDEEFGMGYLELKLAAAPASKSSAVNSVAIPNGSG
ASVSQGEPSIGRTVLAGRVADGKLDRPDSSMPKPDLGQVKQKGSQSINGLDVQSMPSTAL
HSDSPSQKHVDDSMCREESTIKAASKMSGEQEGRATGKRATPAGSFSKQQKHDVAKDDKS
GKAVGRASGAVSGDVVYPSESRASGSVNVSTTVSGNGSMFSTVPRGAASLTRLLDLSNES
NAELTATKSADLRVSAGKDDVIESFDVHKESTSRLVHSPRQDASKANDKVQKRSIPAEEL
DRLNKRRKGEIDGRDIDCGDTRSSEKERLIDARAADKLHPADYDKHGSDDQILNRASKPL
DRSKDKGGERLERDPRERGDRPDRSREDDAFEKSRDRSTERHGRERSIERVHERVADRNF
DRLSKDERIKDDRSKLRHNEASVEKSHTDDRFHNQNLPPPPPLPPHMVPQSINAGRRDDD
ADRRFGIARHSQRLSPRHDERERRRSEENNTLLQDDLKRRREEDFRDRKREERELSMKVE
DREREREKICLVKEDMDPNASKRRKLKREHMASEPGEYSPAAHPPLSNNMSQPCDGRDRG
ERKGIIVQQRPGYVDEPGLRIHGKESASKAPRRDADSMYDREWDDDKRQRAEPKRRHRK
NT seq
5580 nt
NT seq
+upstream
nt +downstream
nt
atgtctctttcacctttggagtatttgtactttacagaggactccatcaaagagttgaaa
aatggaaacactagcttcaagttctctcaaccacttcccactcttcgctttctctatgag
ctctgctgggttatggttcgaggtgaattgccctttcagaaatgtaaaatggcattagag
tgtgtggagtttgtggattatgcatcccaggaggagctagggtcgagtttggctgatatt
gttacccaattggctcaggatctgtcattaccgggagaaaatcgtcaacgtgttaacaaa
ctggcaaaatggcttgtggaatctgctttagttcctttgagattttttcaggagcgatgt
gaggaagagtttttgtgggagtctgagatgatcaagataaaggctgcagatttgaagtcg
aaagaggttagggtaaatactcgtcttctttatcagcaaacaaagtttaaccttcttcgc
gaagaaagtgaaggttatgcaaagctggtcactctcctttgtcaaattccagagggttct
acacggaatgcttcagctgctacagttggcataatcaagtcgctgattgggcactttgat
ctggatccaaaccgagtgtttgatattgttttggagtgttttgaacgtcagcctggtaat
agtatatttttggacttgattcccatatttcccaagtcccatgcctcccaaattcttgga
tttaagtttcaatactaccaacgtctggaagtaaatgatcctgttccgagtgaactttat
cagctaacagccttgctggtgaaaagagacttcattgatgttgacagcatttatgcacat
ttacttcccaaggagggggatgcttttgaccattacaatgcattttcagctaagagactt
gatgaggctaacaaaataggtagaataaatcttgctgctactggaaaggatctcatggat
gaagagaaacaaggagatgtgacagtggatctgtatgctgcattggacatggaaacagag
gcagttgctgagcgttcctcggagctagaaaatagtcaacccctgggcttgcttatggga
tttcttgaagtggatgactggtatcatgctcatgtgttgtttgaccgtctctcccatctt
aatccagcagagcatgtacaaatatgtgatggattattcaggctcattgaaaaatcaata
tctgaaccgaatgaccttgtttgcaagatgcaacttttgggttcacttcctggagttgtc
actgacaactctatggaagtggcaaattcatcaagcaatagatcttatatcaatcttcga
aaagagctttttgagatgctttcttctgtgggacctcatctttatcgagatacattattg
ctacagaaggtatgcagagtattgagaggttactacatttgtgcacatgagcttgtcact
agtggtgaggcaggctttatctcccaaactgttaccattggagatcgaactcctcgaatg
cacctgaaggatgctaggtcaagaattgaagaagcattaggaggatgcctgcttccttcc
ttacagttgataccagcaaatcctgcagttggactagagatctgggaactaatgaatctc
cttccgtatgaggtgcgttatcgtttgtatggtgaatgggagaaagatgatgaccaattt
ccaatgcttttggctgcaaggcaaacagcaaagttggacactaggaggatcctgaagcgc
cttgcaaaagaaaatctaaagcagcttggtcgaatggttgccaaacttgctcatgccaac
ccaatgacagtcttgcgaacaattgttcaccagattgaggcttacagagatatgattaca
cctgttgtagacgcttttaagtatctgactcagttggaatatgatattttggaatatgtt
gttattgaacggttggcacaaagtgggagagagaagctgaaagatgacggccttaatttg
tctgattggcttcagtctttggcatcattttggggtcacctgtgtaaaaaatatccgtca
atggaattgaggggcctttttcagtatcttgtgaatcagttgaagaaaggaaatggtatt
gagcttgttttcatgcaggagctcattcagcaaatggctaatgtacactatacagaaaat
atgacagaggagcaattggatgccatggctggaagtgacactctacgctaccaggctacc
tcatttggtataacacggaacaataaggcattgattaaatcgactaacaggctgagagat
gctttgctcccaaaagatgaaccaaagttggcaattccacttttgctactcattgctcaa
catcgttctctggtagttataaatgccgaagttccatttattaaaatggtcagtgaacag
tttgataggtgtcatggagcccttcttcagtatgtggaatttttgtctagtgcggtgact
ccaacagctgcctatgctgttcttattccagctctggatgagcttgtacatgtgtatcat
cttgatcctgaggtagcatttttgatctatcggcctgttatgaggctcttcaggtgtcag
agaaattcagatgtcttttggccttcagatagtgatgaagcagtgagtgcagccaatgct
gaaaaggagtctgaaagatcagactcatctgcttgcttactccttgatcttggttcttct
tggaaacctatctcatggacagaccttcttgataccatcaaaacaatgttgccttcaaaa
gcctggaatagcttgtccccagacttgtatgccaccttttggggtcttacactctatgat
cttcatgttcctagatcccgttatgagtctgaaattggtaagcagcatgctgctcttaaa
gctctggaagaactttctgataattcaagttctgcaatcacaaaaaggaaaaaagataaa
gaaagaattcaagagtctctagatcggttaactatggagcttcagaggcatgaagagcat
gtaacatctgttcggagacgcctgactcgtgagaaggatacatggctgagttcctgtcct
gatactttaaagatcaacatggaattccttcagcggtgtatatttccacgctgtacattc
agtatgccggacgctgtgtattgcgccgtgtttgttaatactcttcattcccttggaacg
cctttcttcaacactgtgaatcacatagacgttttgatatgtaagacattacaacccatg
atctgttgttgcaccgagtatgaagtaggtcgactaggaagatttttgtatgagacattg
aagatggcttattattggaagggtgatgaatcaatttatgaacgtgagtgtggaaacatg
cctggatttgccgtctattatagatatccaaacagccagcgtgttacgtatggccagttt
attaaggtacactggaagtggagtcagagaatcacgaggttgctcatacagtgtctggaa
tcaactgagtacatggaaatcagaaatgctcttattttattgacaaagatctccagtgtc
tttccagttactcggaagagtggaataaaccttgagaagagggttgccaaaattaaatct
gatgaaagagaggatctcaaagtattggctacaggggttgctgcagctttggcatctaga
aagccatcatgggtgacagatgaagagtttggaatgggttacctagaactaaaacttgca
gcagcacctgcttctaagtcttcggctgttaattcagtggccataccaaacgggagcggc
gctagtgtttctcaaggtgagccttctattggaagaactgtgctggcaggaagagtagct
gatggcaagttggataggccagacagttctatgccaaaacctgatttaggtcaggtaaaa
cagaaaggcagtcaatcaattaatggactggatgtgcaatctatgccatctactgccctg
cattctgatagtccaagtcaaaaacacgtagatgactctatgtgtagggaagagagtacc
ataaaagctgcttctaagatgtctggcgagcaggagggaagagctacaggcaagcgagct
actcctgctggatctttctcaaagcaacaaaagcatgatgttgcaaaagatgacaagtct
gggaaagctgttggaagagcatctggagctgtttctggtgatgttgtttatccatctgag
agcagagcaagtgggagtgttaatgtttctactaccgtttcagggaatggtagcatgttt
tctactgtacctagaggtgcagcttcattaacgagattgttagatctttcaaatgaatct
aatgctgaacttacagctactaagtctgctgatctgagggtttctgctggaaaagatgat
gtcattgaaagttttgatgtgcataaggagtccacatcgcgtctggttcattcgcctaga
caggatgcttctaaagctaatgataaagtacagaagagatctattcctgcagaagagctt
gatagactgaataaacgccggaaaggtgaaattgacggtagagatattgattgtggtgat
acccgttcatcggagaaagagcggttgatagatgcacgagctgcagataaacttcatcca
gcagattatgataaacatggttctgatgatcaaatattgaaccgagcctctaagcctctt
gatagatcaaaagataagggtggtgaaagacttgagagagaccccagagaacgaggggac
cgtcctgataggtctcgcgaggatgatgcatttgaaaaatctagagataggtcaacggag
cggcatggaagagaacgttcaattgagagagtgcatgaaagagttgctgataggaacttt
gataggttgagtaaggatgaaagaatcaaagatgataggagcaagctgcgacataatgaa
gcatctgtagaaaaatctcatacagatgatcggtttcacaatcaaaatttgcctccacct
ccaccattgcctcctcacatggtcccacaatccattaatgcaggcaggagagatgacgat
gctgatagacgttttggaattgccaggcatagtcaaagactttctccaaggcatgatgag
agagagagacggcggtcagaagagaataacacattgttgcaggatgatttgaagagaagg
agagaagaagattttcgagatagaaagcgggaagagagagaactttcaatgaaggtagag
gatagggaaagagagagggagaaaatatgccttgtgaaagaagatatggatccaaatgcc
tcaaagaggcgtaaacttaaaagagagcatatggcttcagaacctggcgagtattcaccc
gctgctcatcctcctctttctaataatatgtcgcagccctgtgatggaagagatagggga
gagcgaaagggtattattgttcagcagcgtccaggttacgtggacgagccaggtcttagg
attcatggaaaagaaagtgccagcaaagcaccccgtcgtgatgcggactctatgtatgac
agagagtgggatgacgacaagaggcaaagagctgagcccaagaggcggcatcggaagtaa
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