Solanum dulcamara (climbing nightshade): 129876108
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Entry
129876108 CDS
T09577
Name
(RefSeq) carbon catabolite repressor protein 4 homolog 1-like
KO
K12603
CCR4-NOT transcription complex subunit 6 [EC:
3.1.13.4
]
Organism
sdul
Solanum dulcamara (climbing nightshade)
Pathway
sdul03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
sdul00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
129876108
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
sdul03019
]
129876108
Enzymes [BR:
sdul01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.13 Exoribonucleases producing 5'-phosphomonoesters
3.1.13.4 poly(A)-specific ribonuclease
129876108
Messenger RNA biogenesis [BR:
sdul03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
P-body specific factors
129876108
mRNA degradation factors
3'-5' decay
Ccr4-NOT complex
129876108
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Exo_endo_phos
zf-C6H2
IG_AIR9
PDE12-like_N
Motif
Other DBs
NCBI-GeneID:
129876108
NCBI-ProteinID:
XP_055807407
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Position
12:complement(1213472..1221962)
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AA seq
605 aa
AA seq
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MLSVLRVHLPSDIPIVGCELTPYVLLRRPNKDKSIISEDVSESAPVDGYFLRYKWYRIQS
DKKVAICSIHPSEQATLQCLGCVKAKIPVTKSYHCSPKCFSDAWQHHRVLHERAASAVNE
NGNEEEEIFGRFNSTGSGVINASLTSSQSSGSLANGTTPLYPAAITQRNGSETWFEVGRA
KTYTPTADDIGHALKFECVVVDAETKLPVGPSSTILTSRVIPAPCPTPRRMFSVSGVDIP
GHLDLDGRLSSSGTFTVLSYNILSDAYATNELYSYCPSWALSWTYRRQNLLREIVGYRAD
IVCLQEVQSNHFEEFFAPELDKHGYQALFKRKTAEVFSGSINNIDGCATFFRRDRFSHVK
KYEVEFNKAAQSLTDAVVPIAQKKTALNRLVKDNVALIVVLEAKFSNQGVDNPGKRQLVC
VANTHVNVQQELRDVKLWQVHTLLKGLEKIAASADIPMLVCGDFNSMPGSAPHTLLALGK
VDPMHPDLGVDPLGILRPPTKLTHQLPLVSAYSSFARMGVGLGLEQQRRRMDPNTNEPLF
TNCTRDFIGTHDYIFYSADSLTVESLLELLDEESLRKDTALPSPEWSSDHIALLAEFRCK
PRTRR
NT seq
1818 nt
NT seq
+upstream
nt +downstream
nt
atgctgagtgtgttacgggtgcatctcccgtccgatataccgatcgtgggctgtgaactc
accccttatgtccttttacgacggccaaacaaggataaatcaattatttctgaggatgtt
tcagagtctgcaccagttgatggctatttcttgagatacaagtggtaccgtatacaaagt
gataaaaaagttgccatttgtagtatccatccatctgaacaagccacattgcagtgcctt
gggtgtgtgaaggccaaaatccctgtcactaagagttaccattgctcacctaaatgcttc
tcagatgcatggcaacatcatcgtgttctgcatgaacgtgccgctagtgctgtaaatgaa
aatggaaacgaggaggaagaaatatttgggcgatttaatagtactggatctggtgttatt
aatgcgagtttgacgtcttctcaatcaagtggcagcttggcgaatggaaccacaccttta
tatcctgcagcaataacccaaagaaatggcagcgaaacctggtttgaagttggacgggct
aaaacatatacaccaactgcagatgatattggtcacgcgctaaaatttgaatgtgttgtt
gtagatgccgaaacaaaattacctgttggaccttctagtaccatattgacatcccgagtg
attccagctccatgtccaactccacgtcgcatgttttcagttagcggagtcgatattccc
ggacatctggatttggatggtcgattatcatcttcaggaactttcactgtgctctcctac
aatattctgtctgatgcctatgcaacaaacgaattatacagttattgcccctcttgggct
ctttcttggacatatcgtagacagaatcttttgcgtgaaatagttggctaccgtgcagac
attgtttgtcttcaagaggttcaaagtaatcattttgaagaattctttgctcctgagctg
gataaacacggttaccaagctctgtttaaaagaaaaacagctgaggtgtttagtgggagt
attaacaatattgatggttgtgctacatttttccgccgagatagattctcacatgttaaa
aaatatgaggtcgagtttaataaagctgcacaatctttgactgatgctgtggttcccatt
gcccaaaagaagactgcattaaatcgtttggttaaggataatgttgcacttatagtggtt
ttggaagcaaagttcagcaaccagggggttgacaaccctgggaagcgtcaactagtttgt
gtggccaacacacatgtaaacgttcagcaagaattaagggatgtcaaactgtggcaggtt
cacacacttcttaaaggacttgaaaaaatcgctgctagtgctgacattccaatgctggtc
tgtggggattttaattcgatgcccggaagtgctcctcatacacttcttgctttggggaaa
gttgatccaatgcatccagatcttggagtggatcctcttggtattttgcgtccacctaca
aagttaacgcaccagctcccattggttagtgcttattcatcctttgccagaatgggggtg
ggacttggactagagcagcaaaggaggaggatggatcctaataccaatgagcccttgttt
accaactgcaccagagattttattggcactcatgattatatattttactcagctgattca
ttaactgttgaatctttattggagctcttggatgaagaaagcttgagaaaagacacagca
cttccttctccagagtggtcctctgatcatatagcactcttagctgaatttcgctgcaag
cccagaactagacgctga
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