Solanum dulcamara (climbing nightshade): 129876181
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Entry
129876181 CDS
T09577
Name
(RefSeq) zinc finger CCCH domain-containing protein 49-like
KO
K12872
pre-mRNA-splicing factor RBM22/SLT11
Organism
sdul
Solanum dulcamara (climbing nightshade)
Pathway
sdul03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
sdul00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
129876181
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
sdul03041
]
129876181
Spliceosome [BR:
sdul03041
]
Complex B
Other components
Prp19-related factors
129876181
Complex C
129876181
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
STL11_N
RRM_1
zf-CCCH_RBM22
Torus
zf_CCCH_4
RRM_occluded
RRM_YTH1
zf-CCCH_12
zf-CCCH_2
zf-CCCH_10
zf-CCCH_3
zf-CCCH
zf-CCCH_4
zf-CCCH_PARP12
RRM_3
Motif
Other DBs
NCBI-GeneID:
129876181
NCBI-ProteinID:
XP_055807505
LinkDB
All DBs
Position
12:complement(1439493..1444592)
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AA seq
479 aa
AA seq
DB search
MAHRLLRDAEADGWERSDFPIICESCLGDSPYVRMTKADYDKECKICTRPFTVFRWRPGR
DARYKKSEICQTCSKLKNVCQVCLLDLEYGLPVQVRDTALSINSNDAIPKSDVNREYFAE
EHDRRARAGIDYESSYGKVRANDTIMKLQRTTPYYKRNRAHVCSFYIRGQCTRGLECPYR
HEMPETGELSQQNIKDRYYGVNDPVALKLLNKAGEMPSLEPPDDESIRTLYVGGVDARIT
EQDLRDHFYAHGEIESIKMVVQRGCAFVTYTTREGAVKAAEELANKLVIKGLRLKLLWGR
PQVPKPESEVSDEARQQAALTHSGLLPRAVISQQQNQPLQPPGTQDQPPSMPYFNIPPMP
QQDRPYYPSMDPQRMGAVIASQEGSSSSTTGSGPGENKSGSEHQQGQRYAYPPGGPPPQG
QFYPPYYHPPYGYMQPPPPPYQQYPPPPYQATAPPPPRGQQAAHQQIPQPAAAATTQQP
NT seq
1440 nt
NT seq
+upstream
nt +downstream
nt
atggcgcataggttgctgagagatgctgaagctgatggatgggaacgatctgatttccct
attatatgcgagtcgtgtctcggtgatagtccatatgtgcgaatgacaaaagcagattat
gacaaggagtgcaagatctgcacgcgacccttcacagtgttcaggtggaggcctggtcgg
gatgcgagatacaaaaagtctgagatctgtcagacctgcagcaaattgaagaatgtttgt
caagtttgcctgttagatcttgaatatggtttgccagttcaggtcagagacactgctctc
agtatcaactcaaatgatgccatcccaaagagtgacgtaaatagagaatattttgcagag
gagcatgaccgcagggcaagagctggtattgattatgaatcttcatatgggaaagtccgt
gcaaatgatactatcatgaagcttcaaagaacaactccatactacaagagaaatcgggca
catgtttgcagtttctatatacgtggtcaatgtacaagaggtttggagtgtccttaccgg
catgagatgcctgaaacaggggagttgtcacagcaaaatatcaaagaccgttactatgga
gtcaatgatccagtggctttaaagctacttaataaagcaggtgaaatgccttcattggag
ccccctgatgacgagagcattagaaccctctatgtgggtggtgttgatgcaagaatcact
gagcaggaccttagggaccatttttatgcacatggtgaaattgagtccattaaaatggtg
gtccagcgtggttgtgctttcgtgacttacacgactagagaaggtgcggtgaaggcagct
gaggaacttgcaaacaagctggtgataaagggcctgagactgaagctactctgggggaga
cctcaagttcccaagccagagtccgaggtctctgatgaagcaagacagcaggctgctttg
actcacagtggtttgttgcctagagcagtcatatcacagcagcagaatcaacctcttcag
cctccaggcactcaggaccaacctccatccatgccttacttcaacatacccccgatgcct
cagcaagacagaccatattatccatcaatggatccacaaaggatgggtgccgtaattgca
tcccaggaagggtcttctagttcaactacaggatctggtcctggtgaaaacaagagcggt
tctgagcatcaacaaggacaacgttatgcatatccacctggagggccaccacctcaaggt
caattttacccgccttattatcatccaccctatgggtatatgcaaccacctcctccacct
tatcagcagtatcctcctccaccttatcaagctacagcacccccaccacctaggggtcag
caagccgcgcatcagcagatccctcagccagctgcagcagcaaccacacagcagccttaa
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