Solanum dulcamara (climbing nightshade): 129876211
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Entry
129876211 CDS
T09577
Name
(RefSeq) cell division cycle protein 48 homolog
KO
K13525
transitional endoplasmic reticulum ATPase
Organism
sdul
Solanum dulcamara (climbing nightshade)
Pathway
sdul04141
Protein processing in endoplasmic reticulum
Brite
KEGG Orthology (KO) [BR:
sdul00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
04141 Protein processing in endoplasmic reticulum
129876211
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
sdul03019
]
129876211
03009 Ribosome biogenesis [BR:
sdul03009
]
129876211
04131 Membrane trafficking [BR:
sdul04131
]
129876211
09183 Protein families: signaling and cellular processes
04147 Exosome [BR:
sdul04147
]
129876211
Messenger RNA biogenesis [BR:
sdul03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
Ran-mediated transport factors
129876211
Ribosome biogenesis [BR:
sdul03009
]
Eukaryotic type
Pre-60S particles
Ribosome quality control proteins
129876211
Membrane trafficking [BR:
sdul04131
]
SNARE
SNARE associated proteins
Others
129876211
Autophagy
Aggrephagy
Other aggrephagy associated proteins
129876211
Exosome [BR:
sdul04147
]
Exosomal proteins
Exosomal proteins of haemopoietic cells (B-cell, T-cell, DC-cell, reticulocyte, and mast cell)
129876211
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
AAA
AAA_lid_3
CDC48_N
RuvB_N
CDC48_2
AAA_16
AAA_2
AAA_22
AAA_33
AAA_5
AAA_14
TIP49
NPHP3_N
RNA_helicase
nSTAND3
AAA_17
Mg_chelatase
AAA_28
ATPase_2
AAA_18
Parvo_NS1
Viral_helicase1
Vps4_C
ABC_tran
IstB_IS21
NACHT
AAA_7
NB-ARC
AAA_lid_PRS2_C
AAA_24
TsaE
DUF815
Zeta_toxin
Zot
Motif
Other DBs
NCBI-GeneID:
129876211
NCBI-ProteinID:
XP_055807550
LinkDB
All DBs
Position
12:5531423..5536245
Genome browser
AA seq
808 aa
AA seq
DB search
MTNKAESSDSKGTKRDFSTAILERKKSPNRLVVDEATNDDNSVVALHPDTMEKLQLFRGD
TILIKGKKRKDTICIALADDTCDVPKIRMNKVVRNNLRVRLGDVVSVHQCPDVKYGKRVH
ILPIDDTIEGVTGNLFDAYLKPYFLEAYRPVRKGDLFLVRGGMRSVEFKVIETDPSEYCV
VAPDTEIFCEGEPVSREDENRLDEVGYDDVGGVRKQMAQIRELVELPLRHPQLFKSIGVK
PPKGILLYGPPGSGKTLIARAVANETGAFFFCINGPEIMSKLAGESESNLRKAFEEAEKN
APSIIFIDEIDSIAPKREKTNGEVERRIVSQLLTLMDGLKSRAHVIVMGATNRPNSIDPA
LRRFGRFDREIDIGVPDEVGRLEVLRIHTKNMKLAEEVDLERICKDTHGYVGADLAALCT
EAALQCIREKMDVIDLEDETIDAEILNSMAVTNEHFQTALGTSNPSALRETVVEVPNVSW
EDIGGLENVKRELQETVQYPVEHPEKFEKFGMSPSKGVLFYGPPGCGKTLLAKAIANECQ
ANFISIKGPELLTMWFGESEANVREIFDKARQSAPCVLFFDELDSIATQRGSSSGDAGGA
ADRVLNQLLTEMDGMNAKKTVFIIGATNRPDIIDPALLRPGRLDQLIYIPLPDEDSRHQI
FKACLRKSPLSKDIDLRALAKYTQGFSGADITEICQRACKYAIRENIEKDIEREKRRSEN
PEAMEEDIEDEVPEIKAAHFEESMKYARRSVSDADIRKYQAFAQTLQQSRGFGSEFRFSE
TSTAGTTGTATDPFATSAGGADEDDLYS
NT seq
2427 nt
NT seq
+upstream
nt +downstream
nt
atgactaacaaagctgaatcttccgattcgaaagggacaaagagggatttcagtacagca
attttggagaggaagaagtcgcctaatcgacttgttgtggatgaggcaaccaatgatgac
aactctgttgttgctcttcaccctgatactatggagaagcttcagctttttcgtggtgac
actatcttgatcaagggtaagaagagaaaagatacaatctgcattgcccttgctgatgac
acctgtgacgtgccgaagattaggatgaacaaggttgtgagaaataacctaagggttcga
cttggtgatgttgtctctgtgcatcagtgccctgatgtcaagtatggcaaacgcgtacac
attcttcccattgatgacaccattgaaggagtcactgggaacctctttgatgcttacttg
aagccctattttcttgaagcatacagaccagtgaggaagggtgatctttttctggtaagg
ggaggcatgagaagtgtagagttcaaggttattgagactgatccttctgaatactgtgtt
gttgcccctgatactgaaatattttgtgagggtgaacctgtgagtagggaagacgagaat
agactagatgaggttggttacgacgatgtaggtggtgtgcgtaaacaaatggctcaaata
agggagcttgttgagctgccactaaggcacccacaactcttcaaatctattggtgtcaag
cctcccaaaggaattttgttgtatggacctcctggatcaggaaagactttaatagcccga
gctgtagcaaatgagactggtgcgttctttttctgcattaatggtccagagatcatgtca
aaattggctggagaaagtgaaagcaatctcaggaaagcatttgaagaagctgagaagaat
gcaccatcaatcattttcattgatgaaattgattcaatagctcctaaacgtgagaagaca
aatggagaggttgagaggagaattgtctctcagctgttgacactaatggatggactcaag
tcacgtgcccatgtaattgttatgggtgccactaatcgccccaatagcatcgaccctgcc
ttgagaaggtttggtagatttgacagggaaatagacattggtgttccggatgaagtgggg
cgtctcgaggtgcttcgtatccatacgaagaacatgaagcttgctgaagaagttgattta
gaaagaatttgcaaagatacacatggttatgttggagctgatttagcagctttgtgtacc
gaggctgcactccaatgcatcagagagaagatggacgtgatagatttggaggatgagacc
atcgatgcagagattctgaactctatggctgtgacaaatgagcacttccaaactgctctt
gggacgagcaatccttctgccttgcgtgaaactgttgttgaagttcccaatgtttcatgg
gaggatattggaggtcttgagaatgtcaagcgtgagctccaagagactgttcaatatccg
gtggaacatcctgagaaattcgagaagtttggtatgtctccctcgaagggagtccttttc
tatggcccacctggatgtggaaaaactttgctcgcaaaggccattgcaaatgaatgccag
gccaacttcatcagtatcaagggtccagaactgcttaccatgtggtttggagagagtgaa
gccaacgttagagaaatatttgacaaggcccgccaatctgctccgtgtgtcctatttttt
gatgaactggactcaatcgccacacagagaggaagtagctcgggagacgctgggggagct
gctgatagagttttgaatcaactccttactgaaatggatggcatgaatgctaagaagact
gtgttcattattggtgcaaccaacaggccagacatcattgatcctgcacttctgcgtcct
ggtcgtcttgaccaattgatttatattcctctccctgatgaagattctcgtcaccaaatt
ttcaaggcatgcctgaggaaatcacctctttctaaggatatcgatctaagagctcttgca
aaatatacacagggctttagtggagctgacattacagaaatctgtcaacgtgcttgcaaa
tacgctatcagagaaaacattgagaaagatattgagagggagaaaaggagaagtgagaat
cctgaagccatggaggaagacattgaagacgaggtacctgagatcaaggctgctcacttt
gaggaatcaatgaagtacgctaggaggagtgtcagtgacgctgatattcgcaagtaccag
gcttttgctcagacattgcagcagtctagaggtttcggttctgaattccgattttccgag
acgagcactgcagggaccactggaactgctactgacccctttgcaacttcagctggcgga
gcagatgaagatgacctgtatagttag
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integrated database retrieval system
