Solanum dulcamara (climbing nightshade): 129876501
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Entry
129876501 CDS
T09577
Name
(RefSeq) LOW QUALITY PROTEIN: serine/arginine-rich splicing factor SR45-like
KO
K14325
RNA-binding protein with serine-rich domain 1
Organism
sdul
Solanum dulcamara (climbing nightshade)
Pathway
sdul03013
Nucleocytoplasmic transport
sdul03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
sdul00001
]
09120 Genetic Information Processing
09122 Translation
03013 Nucleocytoplasmic transport
129876501
03015 mRNA surveillance pathway
129876501
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
sdul03019
]
129876501
Messenger RNA biogenesis [BR:
sdul03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
EJC complex
129876501
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RRM_1
RRM_occluded
Nup35_RRM_2
RRM_5
Motif
Other DBs
NCBI-GeneID:
129876501
NCBI-ProteinID:
XP_055807928
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Position
12:67445604..67450715
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AA seq
398 aa
AA seq
DB search
MAKPGRGRAASPSGSSSRSRSRSRSFTPSDSHSSSSRSPSRSRSRSRSISSSSSASRSAS
SRSPSPRLPAHRRSPAGVSKRGRSPPPPPESKKASPPPRKVSPIPESRVIHVDQLSRNVN
ENHLKEIFGNFGEILHVQLAIDHVVNLPKGFAYVEFKTRIDAEKAQLHMDGAQIDGKVVH
ARFTLPERKKAASPPRPVATSSRRDAPRTDSASVDVEKDGPKRQQELSPRRKPASPPRRS
PIGRRGSPRRAPDSPVRRRVDSPIRRRANSPFRRGSPPPPRRRPGSPIRRRSPSPPPRRH
RTPPRGSPRRIRGSPVRRRSPLPPRRRSPRRARSPPRRSPVGRRSSRSPIRRPIRSRSRS
ISPRRGRGPAARXWEVIILLFFSQSSQGTPQDFKESQS
NT seq
1197 nt
NT seq
+upstream
nt +downstream
nt
atggcgaaaccaggccgaggccgtgcggcttcaccgtcaggctcgtcttctcgttctcgt
tcccggtctcgctctttcactccttcagactctcactcctccagttcgcgttctccatct
cgatctagatctcgctccagatcaatttcttcatcttcttctgcttcccgcagtgcaagt
tctcgtagccccagcccacgccttcctgctcatcgtagaagccctgctggagtatctaag
cgaggccgctcaccaccaccacccccagagtctaagaaagcttctccacctccaaggaaa
gtatctcctatacctgagtcgcgtgtgattcatgtggatcagctcagcaggaatgtcaat
gaaaaccatttgaaagaaatatttggtaattttggtgaaattctgcatgtgcagttggcc
attgatcatgttgttaatcttccaaaagggtttgcttatgttgagttcaagactagaatt
gatgctgagaaagcccaactacacatggatggtgcacagattgatggtaaagtagttcat
gccaggttcaccctaccagagcgaaagaaggctgcctcacctccaaggcctgttgcaact
tcctcaagaagagatgctccaagaactgatagtgcttctgttgatgtggagaaagatgga
ccaaaacggcaacaagagttatctcctcgtcgaaaacctgcctctccccctcggaggtct
cctataggacgaaggggatctcctagacgtgcgccagattctcctgttcgtcgacgtgtt
gactctcctattcgccgtcgagcaaattctccttttaggcgcggcagtccaccgccccca
aggaggaggcctggatctcccattagacgccgttcaccatcccctccaccaagacgtcat
cggacacctccaaggggctctcccagaagaattcgtggcagtcctgttcgaagacgttct
ccccttccgccaaggcgacgttctccacgacgtgctagaagtccacccagaagatctccg
gttggtcgtcggtctagccgttcacctattaggaggcctatccggtcacgatcaagatcc
atttctcctaggcggggaaggggtccagctgcaagancgtgggaggtcatcatcctactc
ttcttctcccagtcctcgcaagggaccccgcaagatttcaaggagtcgcagtcctag
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