Solanum dulcamara (climbing nightshade): 129876979
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Entry
129876979 CDS
T09577
Name
(RefSeq) uncharacterized protein LOC129876979
KO
K15362
fanconi anemia group J protein [EC:
5.6.2.3
]
Organism
sdul
Solanum dulcamara (climbing nightshade)
Pathway
sdul03440
Homologous recombination
sdul03460
Fanconi anemia pathway
Brite
KEGG Orthology (KO) [BR:
sdul00001
]
09120 Genetic Information Processing
09124 Replication and repair
03440 Homologous recombination
129876979
03460 Fanconi anemia pathway
129876979
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
sdul03400
]
129876979
Enzymes [BR:
sdul01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.3 DNA 5'-3' helicase
129876979
DNA repair and recombination proteins [BR:
sdul03400
]
Eukaryotic type
DSBR (double strand breaks repair)
HR (homologous recombination)
BRCA1-B complex
129876979
FA (Fanconi anemia) pathway
Downstream FA components
129876979
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Helicase_C_2
DEAD_2
HBB
DUF4230
Motif
Other DBs
NCBI-GeneID:
129876979
NCBI-ProteinID:
XP_055808430
LinkDB
All DBs
Position
12:complement(1695967..1712409)
Genome browser
AA seq
1280 aa
AA seq
DB search
MKNSKRPPPSSGTQGPKPSKHVVHIGGIPVEFPYQPYGTQLAFMNRVIVTLDRAHRDGHS
HALLESPTGTGKSLSLLCSTLAWQQNFKSKNRYSNLTHSKPDPQALADPIGHGGGFIPEM
QPSGNPDTAPPSASNGTKKKKAAPTIFYASRTHSQISQVIREYRKTSYRVQMAILASRKH
YCTNVNVRGQDNIDEKCKLLLKDRESGCSEFKNTHKVKGHPSIQKGGCHEAHDIEDLVKV
GQIVKGCSYFGARSMADDAELVFCPYSYIINPVVRRAMEVVITGAIIILDEAHNIEDICR
DAGSVDVEEDILLQLQMELEKLIQSNTMIYQPLVDMTQDIRSWIARKINTLEKHGFQHYA
SCWTGDKALKELQEANVTKQCFPILQECASKAIRAASEAEPETDHLSGMAASVLEGIFSS
LNYFFSRDGLHVCDYQLALQRYVKKSPGTAVGGWTQTFSLWCLNPAVVFREIADSCLSVI
LTSGTLSPMDSFSSELGITFGTSLEAPHVIDVESQLWAAVISRGPRNYPLNASFKTADSY
AFQDALGTSLEEICKIVPGGCLVFFPSYKLMEKLSSRWKETGQWARLNARKPIFIEPRGD
QEEFELVLNGYYSSINQRKKLVTGRKKKAKGSALSDSTSHEVSDENKKEGAAFLAVCRGK
VSEGIDFSDEKARVVIIVGIPFPNINDIKVDLKKKFNTTYKSSKNLLSGSEWYCNQAFRA
LNQATGRCIRHRFDYGAVIFLDERFCEARNRAYISKWLRNSIRHYSGFDQSIEELKSFFR
DVKERVGKAASSLQSSVIDVEENTFVTKNIRTRQKNQKLSTSDVKGLKEEENSALICQKA
PLLCQSSCIDTMYNTSSTKMKIDAPHLTLSDDEDSDGRRGYIDLECDSEISSRFSGDPLI
VSHTADPQLTIVKETPATDDIIHISSPQSFSKDEYSSSTIIQASSDLSDHLANHPITQQN
TELGCKSPCLMITPQKDVYTKANMISFDVESSINSSVNSHVGKRIKRLDLSSIVHLHVEE
YDSQMTKTPTHDSSTCRSRKIKDANQMIDSDSRISQLDKELEKSKFPRSSVLDNCETSVV
QSKLAMSERLQIFCSLCKNPLGLPENNLFVMCSRTSTTKTHLKSLWKGQPETPDPSRHSI
PILIANFSCVDQRIYERTSDNLSVQGIWCKEDGCVFKTIFCPFCVNSRHCLGVQVMASDV
SNVQLLNKVLLYWDCLVIKEPEASRKELSPSNNLSSDRGLNSIESFTFTPEQQNLELGGW
RTTKSKMRLPKRSISSSAQR
NT seq
3843 nt
NT seq
+upstream
nt +downstream
nt
atgaagaattctaaacgaccaccgccgtcgtcggggacccaaggccctaaaccgtcaaaa
catgtggtgcatataggcggtattccggtggagttcccttaccaaccctacggcacacaa
ctagctttcatgaatcgagtcattgtgacacttgatcgagcacatagagatggccattct
cacgcgctgctggagtctcctaccggtacaggaaagtcgctttcccttctttgctcaact
cttgcttggcaacagaacttcaagtcgaagaatcgttattctaatcttactcactccaag
cccgatccgcaagccctagctgatcctattggtcacggcggaggatttattcctgaaatg
cagccctcaggcaacccagatacagcgccaccttctgcaagtaatgggacgaaaaagaaa
aaagcggcacctaccatcttttatgcctcgaggacacattcacaaatttctcaagtgatt
cgggaatacagaaagacaagttatcgggtgcaaatggctatactggcttcacgaaaacac
tactgtacaaatgtgaacgtacgaggtcaagacaacattgatgagaaatgcaagttgtta
ttaaaggatcgggagtctggatgctcagaattcaaaaatactcataaagtcaaaggtcat
ccatccattcagaaaggagggtgccacgaggctcatgatattgaagatcttgttaaagtt
ggacaaattgtcaaaggctgctcatactttggagcacgttccatggctgatgatgcggag
ttagtgttctgtccatacagctatatcatcaatccagttgttagaagagcaatggaagta
gttataacaggagccatcattattctcgatgaagcccacaatatagaagacatttgtcgt
gatgctggtagtgttgatgttgaggaggatattttgcttcagttgcagatggaactggag
aaactcatacaatctaatacaatgatttaccaacctttggtagatatgacacaggacata
aggagttggattgctaggaagataaatactttagaaaagcatggcttccaacactacgct
tcatgttggactggtgacaaggccttgaaagagctacaagaagccaatgtgacaaagcag
tgctttccaattttacaggaatgtgcctcaaaggccatcagagctgcctctgaagctgag
ccagagacagatcatttgagtggcatggcagcatctgtattagaaggaatattctcctca
cttaattacttcttctcgagagatgggcttcatgtgtgtgattatcagctagctttacaa
cgctatgtcaagaaaagtcctggaactgctgttggtggctggacacaaacttttagtttg
tggtgcttaaatccagctgttgtgttcagagaaattgctgattcttgtctatcagtgatc
ctaacatcagggacgttatctccaatggattcattttcctctgaacttggtattactttt
ggtacttctctggaagctccacatgttatagacgttgaatcacagttatgggctgctgta
atctcgagaggaccaagaaattatcctctgaatgcaagtttcaaaacagctgattcatat
gcttttcaggatgcacttggcacatctttagaggaaatatgcaagattgttccaggaggt
tgtctagtattttttcctagctataagctgatggagaaactaagcagtcgctggaaagaa
acaggtcaatgggcccgacttaatgctcgaaagcccattttcattgagccaagaggggat
caagaagaatttgaattagttttgaatggttactacagttctattaaccaaaggaagaaa
ctagtgacgggaagaaagaaaaaggcaaaagggtcagcgcttagtgacagtacttcacat
gaagtttcagatgaaaacaagaaagagggagctgcttttcttgctgtttgtcgaggaaag
gtttctgaaggcatagacttttctgacgagaaggctcgtgtagttataattgttggcatt
ccttttccaaacataaatgatattaaagtcgatcttaaaaagaagttcaatactacttat
aagtcatcaaaaaatcttctgagtgggagtgagtggtattgtaatcaagccttcagagct
cttaaccaggctacaggtcgttgcattcgccatagatttgactatggagctgtgatcttt
ttagatgagcgtttctgtgaagcaaggaatagagcttatatatcaaagtggttgcggaat
tcaataagacactacagcggctttgaccaatcaatagaagagctgaaatcctttttcaga
gatgtcaaagagcgtgttggcaaggcagccagttccttacaaagttctgttattgatgtt
gaagaaaatacttttgttactaagaatataagaaccaggcagaaaaatcagaagttgagc
acttctgatgtgaaagggcttaaggaagaagaaaatagtgcattgatttgtcaaaaagct
cctctcctatgtcaatcttcatgtattgataccatgtataatacatcctccactaaaatg
aaaattgatgcccctcatttgacgttaagtgatgacgaggattccgatggtcgcagaggt
tacattgatttggaatgtgattcagaaatttcatctaggttctctggagatccattgata
gtttcacacactgctgaccctcaattaaccattgtaaaagaaactcctgctactgatgac
attattcacatttctagtcctcaatccttctccaaggatgaatattcttcctccaccatt
attcaagcatctagtgacctttcagaccacttggcaaatcatcctataactcaacaaaat
actgagttgggttgtaaatctccatgtttgatgattactcctcaaaaagatgtttataca
aaagcaaacatgatatcatttgatgttgaatcgtcgattaactcaagcgtcaattctcat
gtggggaaaagaataaagcgtttggatttgtcatccatagttcatctccatgtagaagaa
tatgattctcagatgaccaagactcctacgcatgatagttctacatgcagatcaaggaag
attaaagatgcaaaccaaatgattgattctgattccagaattagtcagttagacaaggaa
ctggagaagtccaaatttcctaggtcatcagtcctggataactgtgagacatcagttgtg
cagtctaaacttgctatgtccgaaagactacagatattttgctcactttgcaaaaatcca
ctagggcttcctgagaataatttatttgttatgtgctcacgaacttctacaacaaaaact
cacttaaaatctctttggaagggtcaaccagaaacccctgatccgagcagacatagtata
cctattctcatagctaacttctcttgtgttgatcaacgcatctatgaaagaaccagtgat
aatttatctgttcaggggatttggtgcaaagaagatggctgtgttttcaaaactattttc
tgccccttctgtgtaaattccagacattgtcttggtgtacaggtcatggcttctgatgtg
tctaatgtccagttactgaataaggtgctgctttattgggactgcttggtgataaaggag
cctgaagcatcaagaaaggaattatctccgtccaacaatttaagctctgatagaggtctt
aattccattgagagtttcacatttactcctgagcagcagaatcttgagcttggaggatgg
agaactacaaaatccaagatgcgattaccaaagaggagcatctcatctagtgcacagagg
tga
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integrated database retrieval system
