Solanum dulcamara (climbing nightshade): 129877340
Help
Entry
129877340 CDS
T09577
Name
(RefSeq) tRNAse Z TRZ4, mitochondrial-like isoform X1
KO
K00784
ribonuclease Z [EC:
3.1.26.11
]
Organism
sdul
Solanum dulcamara (climbing nightshade)
Brite
KEGG Orthology (KO) [BR:
sdul00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03016 Transfer RNA biogenesis [BR:
sdul03016
]
129877340
Enzymes [BR:
sdul01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.26 Endoribonucleases producing 5'-phosphomonoesters
3.1.26.11 tRNase Z
129877340
Transfer RNA biogenesis [BR:
sdul03016
]
Eukaryotic type
3'processing and CCA adding factors
3'processing factors
129877340
Prokaryotic type
129877340
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Lactamase_B_4
Anti-Pycsar_Apyc1
Lactamase_B_2
Lactamase_B
Motif
Other DBs
NCBI-GeneID:
129877340
NCBI-ProteinID:
XP_055808844
LinkDB
All DBs
Position
1:complement(79833952..79843116)
Genome browser
AA seq
792 aa
AA seq
DB search
MLQVQISSTAVMERNKDGDKKGPINTQAYVQILGTGMDTQETSPSVLLCFDHERFIFNAG
EGLQRFCTEHKIKLSQVDHICLTRVCSETTGGLPGLLLTLAGMKNESSKSDDHVCIWGPP
NLDLLVNAMKTYVPNAVMKKINIISQSGSALAPPDCDGKFKAVSISAILLSPIRLAGSDF
SPNDTSIVYVCKLHDIRGKVDTVKAKACGLEDQRKLGQLQNGISVKSDLLDIEVHPDDVV
GPTFPGPIVLIVDCPTEPHAQELLSAQALDAYYSDSQSNFTNVVNCIIHLSPATVVNSPV
YEKWMRKFDSAQHIMARTTRKHETTPILVSSARIATRLHYLCPQLFPPPSFPSVQSDDDV
AAPNIKVTVEGSVCGISAENLLKFTLRPPRKMGLDRSCVQNMMTSSLFIEELLSEIPEIA
DAATNISKFWRKHKEDEVKLSETEDSSDVVTEEPSKFSVPRCLENVQRDDLEIVFLGTGS
SIPSKYRNVSSIYVNLFSKGGLLLDCGEGTLAQLKRRYGISGADNVVRNLKCIWISHIHA
DHQAGLARILALRRDLLKGVDHEPILVIGPENVGEFLNEYIKLEDLDMFFLDCWSTTGSK
WDNMEAEDSSLQPCSKKLKPSTPFDDITLRKCLRKVLGEAGLVRLISFPVVHCDDAFGVI
LESTERMNCGKVVPGWKVVYSGDTRPCSEVIEASLGATILIHEATFEDGLVEEAIARNHS
TIKEAIEVGDSAGAYRVILTHFSQRYPKVPALDEVSMQRTCIAFDLMSVNLADLPVLPKV
LPYLKLLFRNNG
NT seq
2379 nt
NT seq
+upstream
nt +downstream
nt
atgcttcaagttcaaatttccagtacagcggtgatggagaggaataaagatggagacaag
aagggtcctattaatactcaagcctatgtgcagattttggggactggaatggatacccaa
gaaacatccccgtctgttctgctctgcttcgaccacgaaagattcatatttaacgctgga
gagggattacaacgtttttgcacggagcataagataaaattatctcaggtagaccacata
tgtcttactcgtgtctgctcagagacaacaggtggacttccaggcttgctattgactttg
gctggcatgaaaaacgaaagttctaagagtgatgaccatgtctgcatatggggtcctcct
aatctagatttattggttaatgcaatgaagacttatgtccctaatgctgtcatgaaaaaa
ataaatatcatctcacaaagtggatctgcattagctccccctgactgtgatggcaagttc
aaggcagttagtatctcagctattctcctatcaccgattcgtttggctggatctgatttt
agtccaaatgatacctctattgtatatgtttgtaaattacatgacattagggggaaagtt
gacaccgtaaaggctaaagcttgtggactcgaggatcagagaaaacttggacagttgcag
aatgggatcagtgtgaagtcagatcttctggatatagaggtccatccagatgatgttgta
ggtccaacttttcctggtccgattgtactgattgtagactgtccaacagaacctcatgca
caagagttactctctgcacaagctcttgatgcgtattattcagattcccaaagcaacttc
accaatgttgtgaattgcatcattcatttgagccctgctactgtcgtcaatagtccagtt
tatgagaaatggatgaggaaatttgattctgcccaacatattatggcaagaactacaagg
aagcatgaaacaactccaattctagtatctagtgctagaatagctacaagactacattat
ttgtgtcctcagttatttccacctcctagttttccttctgttcaaagtgatgatgacgtt
gcagcaccaaatatcaaagtaacagtggagggttcagtttgtggcatatctgctgaaaat
ctcctaaagtttaccttacgtcctcctagaaaaatgggattggacagatcatgtgttcaa
aatatgatgacctcctcattgttcattgaagagttactttcagagattcctgagattgct
gatgcagctacgaacataagcaaattttggcgcaaacataaagaagatgaggtgaaatta
tctgaaacggaggacagtagtgatgtcgtgactgaagaaccttcgaaattctctgtccct
aggtgtctagagaatgtacagagagatgatctagagattgtttttcttggcactggttct
tctataccttcaaaatatcgaaatgtcagttccatctatgttaatcttttctctaaagga
ggtttactccttgattgtggagaaggaactttggcacaactcaagaggagatatggcatt
agtggtgcagacaatgttgttagaaatcttaaatgcatttggatttcccatatccatgct
gatcaccaagcaggtttggcacggatacttgctttaagacgtgatttgttgaagggagta
gaccatgaacccatactggttattgggccagagaatgttggggagtttctcaatgaatat
ataaaattagaagatctagacatgtttttcctcgactgttggagcactacggggtctaag
tgggataacatggaggctgaagacagttctctccagccttgttcgaaaaaattgaagcca
agcactccatttgatgacataacattacgaaagtgtttaaggaaagttctcggtgaagca
ggactagtgagactcatcagcttccctgttgtacactgtgatgacgcgtttggtgtaatc
ttggaatcaacagaaagaatgaattgcggtaaagtagtaccaggttggaaggttgtgtac
tccggtgacacaaggccatgctcagaagttatagaagcatctcttggagcaacaattctt
atacatgaggcgacgtttgaggatggccttgtggaggaggctatagcaagaaatcacagc
acaatcaaggaagctatagaagtgggagattctgctggtgcataccgtgtaatattaact
cactttagccaaagatatccaaaagtacctgcacttgatgaagtgagtatgcaaagaact
tgtattgcttttgacctaatgagtgtaaacctagcagatttgccagtgctccctaaggtt
cttccctacctcaaattgcttttcagaaacaacggttaa
DBGET
integrated database retrieval system
