Solanum dulcamara (climbing nightshade): 129877627
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Entry
129877627 CDS
T09577
Name
(RefSeq) DEAD-box ATP-dependent RNA helicase 8-like
KO
K12614
ATP-dependent RNA helicase DDX6/DHH1 [EC:
5.6.2.7
]
Organism
sdul
Solanum dulcamara (climbing nightshade)
Pathway
sdul03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
sdul00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
129877627
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
sdul03019
]
129877627
03036 Chromosome and associated proteins [BR:
sdul03036
]
129877627
Enzymes [BR:
sdul01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
129877627
Messenger RNA biogenesis [BR:
sdul03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
Common to processing body (P body) and stress granule
129877627
mRNA degradation factors
5'-3' decay
Decapping complex
129877627
Chromosome and associated proteins [BR:
sdul03036
]
Eukaryotic type
Gene silencing
piRNA pathway
129877627
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
CMS1
Motif
Other DBs
NCBI-GeneID:
129877627
NCBI-ProteinID:
XP_055809127
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All DBs
Position
12:complement(59030359..59049713)
Genome browser
AA seq
487 aa
AA seq
DB search
MNPRARYPPPGMGGVGRGGGNMYPNANPNFQPRNPQQYVQRSPVNQQQHFQNQQTQQWLR
RNQLASDSAVDEVEKTGQSEAVDQSSQDWKARLKIPPADTRYRTEDVTATKGNEFEDYFL
KRELLMGIYEKGFERPSPIQEESIPIALTGSDILARAKNGTGKTAAFCIPALEKIDQDVN
AIQVVILVPTRELALQTSQVCKELGKHLKIEVMVTTGGTSLKDDIMRLYQPVHLLVGTPG
RILDLARKGICVLKDCSMLVMDEADKLLSPEFQPSIVQLIRFLPANRQVLMFSATFPVTV
KDFKERYLQKPYVINLMDELTLKGITQFYAFVEERQKLHCLNTLFSKLQINQSIIFCNSV
NRVELLAKKITELGYSCFYIHAKMLQDHRNRVFHDFRNGACRNLVCTDLFTRGIDIQAVN
VVINFDFPKNSETYLHRVGRSGRFGHLGLAVNLITYEDRFNLYRIEQELGTEIKQIPPHI
DQAIYCL
NT seq
1464 nt
NT seq
+upstream
nt +downstream
nt
atgaatccgagagcaagatatccaccgccgggaatgggaggcgttggccgtggtggcgga
aatatgtacccaaatgctaaccctaattttcaaccgagaaatccacagcagtacgtgcag
agaagtccggtgaaccaacagcaacattttcagaatcaacagacacagcaatggctcaga
aggaaccagttggcatctgattcagcagtcgatgaggttgaaaagactggacaatctgaa
gcagttgaccaaagttcacaggattggaaggcgaggttgaagataccacccgctgatact
agatacaggacagaggatgtaacagcgaccaagggtaatgaatttgaagactattttctt
aagcgtgaattgcttatgggaatttatgagaagggttttgagagaccatctccaatccaa
gaagagagtatcccaattgctcttactgggagtgatattttagctagggcaaaaaatgga
acagggaaaactgctgctttctgcattccggcattggaaaaaattgaccaggacgtcaat
gccattcaagttgttatccttgttcctacgcgagaattggctcttcaaacatctcaagtt
tgcaaagaacttggaaagcacttaaaaattgaagtcatggttaccactggggggaccagc
ttgaaggatgatataatgcgactctatcaaccggttcatttactagttggaactcctgga
agaatactcgaccttgcaagaaagggaatatgtgttttgaaagattgttccatgcttgtc
atggatgaggctgataagcttctttctccggagtttcaaccttccattgtgcagctgatt
cgtttcttgccagcaaatcgtcaagttttaatgttctctgctacattccctgtcacagtc
aaggacttcaaagaaagatatctgcagaagccatatgttatcaaccttatggacgaactt
actctcaagggtataacacaattttatgcttttgtagaggaaagacagaagcttcattgc
cttaacactttattctcaaagcttcaaatcaaccaatcaattatcttttgcaactctgta
aaccgtgtggaactgctcgccaagaagatcacagagttaggctattcatgcttctacatc
catgcaaagatgcttcaagatcataggaacagagtatttcatgacttccgcaatggtgcc
tgcaggaaccttgtttgtactgatctgtttactagagggatagatattcaagcagtcaat
gttgttataaattttgatttcccgaagaactcagagacatacttacacagggtcgggcgt
tcagggagatttgggcatcttggtttagctgtgaacctgattacttatgaggatcgcttc
aacctgtatagaattgaacaagaactaggaacagagatcaagcaaattcctccgcacata
gatcaggctatatattgcctttga
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