Solanum dulcamara (climbing nightshade): 129877811
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Entry
129877811 CDS
T09577
Name
(RefSeq) phytochrome A isoform X1
KO
K12120
phytochrome A
Organism
sdul
Solanum dulcamara (climbing nightshade)
Pathway
sdul04712
Circadian rhythm - plant
Brite
KEGG Orthology (KO) [BR:
sdul00001
]
09150 Organismal Systems
09159 Environmental adaptation
04712 Circadian rhythm - plant
129877811
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Motif
Pfam:
PHY
PAS
PAS_2
GAF
HATPase_c
HisKA
PAS_4
PAS_9
PAS_8
Motif
Other DBs
NCBI-GeneID:
129877811
NCBI-ProteinID:
XP_055809318
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Position
12:39266429..39279435
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AA seq
1123 aa
AA seq
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MSSSRPSQSSTTSSRSKHSARIIAQTSIDARLHADFEESGDSFDYSSSVRVTSVAEGEQR
PKSDKVTTAYLHQIQKGKFIQPFGCLLALDEKTLKVIAFSENAPEMLTMVSHAVPSVGEH
PVLGIGTDIRTIFTGPSGAALQKALGFGEVSLLNPVLVHCKTSGKPFYAIVHRVTGSLII
DFEPVKPYEVPMTAAGALQSYKLAAKAITRLQSLPSGSMERLCDTMVQEVFELTGYDRVM
AYKFHDDDHGEVVSEITKPGLEPYLGLHYPATDIPQAARFLFMKNKVRMICDCQAKHVKV
VQDEKLPFDLTLCGSTLRAPHYCHLQYMENMNSIASLVMAVVVNDGDEEGESSDSSQSQK
RKRLWGLVVCHNTTPRFVPFPLRYACEFLAQVFAIHVNKELELESQFLEKNILRTQTLLC
DMLMRDAPLGIVSQSPNIMDLVKCDGAALLYKNKIHRLGMNPSDFQLHDIVSWLCEYHTD
STGLSTDSLYDAGFPGALALGDAVCGMAAVRISDKDWLFWFRSHTAAEVRWGGAKHEPGE
KDDGRKMHPRSSFKAFLEVVKTRSIPWKDYEMDAIHSLQLILRNAFKDADAVNSNTNSIH
TKLNDLKIDGMQELEAVTAEMVRLIETASVPIFAVDVDGQVNGWNTKVAELTGLPVDEAI
GKHLLTLVEDSSVDTVSKMLELALQGKEERNVEFEIKTHGPSRDSSPISLIVNACASKDV
RDSVVGVCFIAQDITGQKIIMDKFTRIEGDYRAIIQNPHPLIPPIFGTDQFGWCSEWNSA
MTKLTGWWRDDVIDKMLLGEVFGTQAACCRLKNQEAFVKFGVILNNAITGQESEKIPFGF
FARYGKYVECLLCVSKRLDKEGAVTGLFCFLQLASHELQQALHVQRLSEQTALKRLKVLA
YIRRQIRNPLSGIIFSRKMLEETSLGIEQKNILHTSAQCQRQLNKILDDTDLDSIIDGYL
DLEMLEFKLHEVLVASISQVMMKSNGKNIMIANDMVEDLLNETLYGDGPRLQQVLADFLL
VSVNSTPTGGQLSISCRLTKDRIGEAVQLALLEFRIRHTGGGVPEELLSQMFGSEADASE
EGISLLISRKLVKLMNGEVQYLREAGRSTFIISVELAVATKSS
NT seq
3372 nt
NT seq
+upstream
nt +downstream
nt
atgtcgtcgtcaagacctagccaatcttccaccacttcatcaagatcaaagcacagtgct
aggatcattgcacagacctctatagatgcaaggttgcatgcagactttgaggaatcaggt
gattcctttgactattcaagctcagtaagggttacaagtgtcgctgagggtgagcaaagg
cccaagtcggacaaagttaccaccgcttaccttcatcagatccagaagggcaagtttatc
cagccatttggttgtctgttagccctggatgagaaaacattaaaggtcatagcattcagt
gagaatgcccctgaaatgctgaccatggttagccatgctgttccaagtgttggtgagcat
ccagttcttggcattgggactgatatcaggacgatcttcactggtcctagtggcgcagca
ttgcagaaagccttagggtttggggaggtttctctgttaaatcctgtccttgttcattgc
aaaacttctgggaagccattttatgcaattgttcatagggttacaggtagcttaatcatt
gattttgagcctgtgaaaccctatgaagttcccatgactgctgcaggggccctgcagtca
tataaacttgcagcgaaagccattactcgcttgcagtctttgcccagtggcagcatggaa
agactttgtgatacaatggttcaggaggtttttgaactcacaggttatgacagggtgatg
gcatataaatttcacgatgatgatcatggagaggtggtgtctgagatcacaaagcctggc
ctcgagccttaccttggtttacattatcctgctacggatattccacaggccgcacgcttt
ttgtttatgaagaataaggtccgaatgatttgtgattgccaagcaaaacatgtgaaggta
gtccaagatgagaagcttccatttgacttaacattgtgcggctctactcttagggcccct
cactactgccatttacagtatatggagaacatgaattcaattgcatcacttgtaatggca
gttgtggtcaatgacggggatgaagaaggagaaagctctgattcttcacaatctcaaaaa
agaaaaaggctatggggcctggttgtttgccacaacacaaccccaaggtttgtccccttc
ccactgagatatgcatgtgagtttcttgcacaagtctttgccatacacgttaacaaggaa
ctggaattggaaagtcagttccttgagaaaaatattctgcgtactcagactctcttgtgt
gatatgctgatgcgagatgctcccctaggtatcgtgtcacagagccccaacattatggat
cttgtcaaatgtgatggtgctgctttgctctataagaataagatacatcgattaggaatg
aacccaagcgactttcagctgcacgatattgtatcatggctttgtgagtatcatacagat
tccacaggcttgagtacggatagcttgtatgatgctggttttcctggggctcttgctctt
ggtgatgcagtctgcggtatggcggctgtgagaatatctgataaggactggctgttctgg
ttcaggtcacacactgccgctgaagttagatggggtggtgcaaagcatgaacctggtgag
aaggatgatggcaggaaaatgcatcctaggtcatcattcaaagcattcctggaagttgtc
aagactaggagtataccctggaaggactatgagatggatgcaatccactctttgcagctt
atactaagaaatgctttcaaggatgctgatgccgtgaattcaaataccaattccatccat
acgaagcttaatgatctaaagattgacggaatgcaggaactagaagcagtgacagctgaa
atggtccgcttaattgaaacagcttcagttcctatattcgcagttgatgtggacgggcag
gttaatggatggaacacaaaagttgctgaattaactggtcttcctgttgatgaagcaatt
gggaaacatctgctcactctcgtggaggattcatcagttgataccgtgagtaagatgttg
gaattagcattgcaggggaaagaggaaagaaatgtagagtttgaaataaaaacacatggg
ccgtcaagggattctagtccaatcagcttaatcgtgaatgcatgtgcaagcaaagatgtt
cgggatagtgttgtgggtgtatgttttattgctcaggatataactggacaaaaaattatc
atggacaagttcacccgaatcgaaggtgactatagagcgattatccaaaatcctcaccca
ttgatcccaccaatatttggtactgatcaatttggctggtgttctgagtggaattctgcg
atgaccaagttaacgggatggtggcgtgatgatgttatagataaaatgctgttaggggag
gtctttgggacacaggcagcttgctgccgtctcaagaatcaagaagcttttgtaaaattt
ggagttatactaaacaatgctatcactggtcaagaatctgagaagattccttttggtttc
tttgcacgttacgggaaatatgtggagtgcttactctgtgtgagcaaaaggttagataaa
gagggtgcagtcacgggactcttttgtttcctgcagcttgcaagccatgagttgcaacaa
gctcttcatgttcaacgattatcagaacaaactgcgttgaaaaggttgaaagtattagct
tacataaggaggcaaattaggaatcctctttctgggattatattctctcggaagatgcta
gaggagactagcttgggcatagagcagaaaaatatactgcatacaagtgcacagtgtcag
cgtcagctcaataaaattcttgatgatacagatcttgatagcatcatagatggttatttg
gatctggagatgctcgagtttaagctgcatgaagtattggtagcatctataagtcaagtc
atgatgaagagcaatggaaagaatataatgatcgcgaatgacatggttgaagatcttctc
aatgaaactttatacggagatggtccgaggcttcaacaagtcctagcagactttttgtta
gtatctgtgaactctacaccaactggtggccagcttagtatttcatgcaggttaactaaa
gatcgcataggagaagctgttcagcttgctctcttggaattcaggataagacacacaggg
ggtggagtgccagaagaattgcttagccaaatgtttggtagtgaagctgacgcatctgaa
gaagggatcagcttgcttatcagcagaaaactggtcaagcttatgaatggggaagttcag
tacctaagagaggccgggcgatcaactttcattatatccgttgaacttgcagtggctacc
aagtcaagctga
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