Solanum dulcamara (climbing nightshade): 129880262
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Entry
129880262 CDS
T09577
Name
(RefSeq) paired amphipathic helix protein Sin3-like 4 isoform X1
KO
K11644
paired amphipathic helix protein Sin3a
Organism
sdul
Solanum dulcamara (climbing nightshade)
Brite
KEGG Orthology (KO) [BR:
sdul00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03036 Chromosome and associated proteins [BR:
sdul03036
]
129880262
Chromosome and associated proteins [BR:
sdul03036
]
Eukaryotic type
Histone modification proteins
HDAC complexes
Sin3A-HDAC complex
129880262
REST complex
129880262
Heterochromatin formation proteins
Other heterochromatin formation proteins
129880262
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Sin3a_C
PAH
Sin3_corepress
PAH_ZNF598
HHD_RTEL1
EF-hand_13
Motif
Other DBs
NCBI-GeneID:
129880262
NCBI-ProteinID:
XP_055810192
LinkDB
All DBs
Position
2:9330382..9342638
Genome browser
AA seq
1359 aa
AA seq
DB search
MSSQLKRPIVSSRAEPSSGQSPMMGGSSANKLTTNDALSYLKSVKEIFQDRRDKYDEFLE
VMKDFKSQRIDTSGVIARVKELFKGHRTLILGFNTFLPKGYEITNPEDEAPAKKPVEFEE
AISFVNKIKTRFQGDDFVYKSFLDILNMYRRENKAIAEVYNEVSYLFRGHADLLEEFTHF
LPDAMAAARARNAQAHRAPILRYDEKSSSMTAVRHMHVEKKATSLVVRENAVDRSDPEYE
ETTMRTEKERKERQYEDRELDRTVHGDVAVDQFEHSMQDHGFAYCEQVKERLQDMADRKQ
FFKCLNVYSREGVTRTQLQTLVSSLLQKHPDLMDGFDEFISHCERTDGYLTAILSKTHTL
RSDESNPKSEKVEDRDKDRDCEWEERNRVRETRERAAAYGNRDTQGQKMSLYPSKDKYAA
KPIHELDLSNCDSCSPSYRLLPKNYPIPLASQKTEIGAEVLNDHWVSVTSGSEDYSFKHM
RKNQYEESLFRCEDDRFELDMLLESVNATTRRVEELLNKVNDNTISSDSHIRIEEHFTAL
NLRCIERLYGDHGLDVMDVLRKNAPLALPVILTRLKQKQEEWARCRSDFNKVWAEIYAKN
YHKSLDHRSFYFKQQDTKSLSTKALLAEIKEINENKCQEDDVLLSVAAGNGQPIIAHLEF
EYPDSDIHEDLYQIIKYSCIEVCTREQLDKVMKIWTTFLEPIFGVPRQPQGEVDGVDVVK
AKNLNAKDKTAIEGERVCSPASGSGMNCRQSSSRNGDELPTSEHLISSRVQIADGENGFK
DDSSLHANGVMLKIVTSKNLLQHGKADANLNMADGASGLSREAFCSDQLVLSNSSTVGES
HGRVCKEIVSGHGAGTSRTSSSTIKREPEIVSSNDSKDGGFVDPKAEGIKVEKCLEESIG
KCKLEREEGELTPNGDFEDNFTPSNEGGQNASHSLKGSSSSKLYQSGHGEKEIRGGDRGC
ENDANEEGEASAHGTSEDSENASENCDVSGSESANGEGSHEEREEDGDNDVNDNKAESEG
EVEGTADVHDAEGDGAVMPFSERLLHTSRPLTKHVPSIFHVREKESRIFYGNDSFYVLFR
LHQTLYERLQKAKLHSSSSEHRWRVSNAINPTESYSRFKSALYNLLDGSSDNAKFEDDCR
AIIGAQSYLLFTLDKLIYKIVKQLQTIATDELESKLLQLYAYETSRNSSTFSDLVYHENV
RALLHDETIYRIACSSKPTRLSIQLMDYVYDKPEMSAVSVDPNFAAYLSNELLSAIPQKE
NPGVFLTRNKRKSGVRDETFTSEAMKGLKFFNGLECKIACSSSKVSYVLDTEDFLIRSRK
RRKILKENFLSNGHSECLNRSNKIQRFRRLFSVEHVHFA
NT seq
4080 nt
NT seq
+upstream
nt +downstream
nt
atgagttctcaactcaaacgtcccattgtttcttctcgtgctgaacccagttctgggcaa
tctccaatgatggggggaagcagtgccaataagctaacaacaaacgatgcactttcctat
ctcaagtcagtgaaggaaatctttcaggacagaagggataagtatgatgagtttcttgaa
gtcatgaaagatttcaagtctcaaagaattgacacttcgggtgtcatagcgagggtgaag
gaattattcaaagggcatcgaaccctaattttgggtttcaatacatttttgcccaaggga
tatgagatcactaatcccgaggatgaagctccagcaaaaaagccagttgaatttgaagaa
gcaatcagttttgtaaacaagataaagactagatttcaaggcgatgatttcgtatataag
tcgtttcttgatattttgaatatgtatagaagggaaaacaaggctattgcagaagtttat
aatgaggtctcctaccttttccgtggccatgctgatttgcttgaagagttcacccacttt
ttacctgatgccatggcagcagcccgagctcgtaatgctcaagctcatagggcccctatc
ctgcgttatgatgagaaaagttcttcgatgaccgcagtaaggcacatgcatgttgagaag
aaggctacttcactagttgtccgggagaatgctgttgatcggtctgatccagaatatgaa
gaaacaacgatgagaactgaaaaggaaagaaaggaacgacaatatgaggatagagagctg
gacagaactgttcatggagatgttgctgttgaccagtttgaacacagtatgcaggaccat
ggctttgcttactgtgagcaggttaaggaaaggttacaggatatggcagatcgaaaacaa
ttttttaagtgccttaatgtctatagcagggaaggagttacaagaacacaattacaaacc
ctggttagcagcttacttcagaaacatccagatctcatggacggatttgatgaatttatt
tctcattgtgagaggacagatggatatcttactgctattctgagcaaaacacacacctta
cggagtgatgaatccaatcccaagtctgagaaagtagaagacagggacaaagaccgagat
tgcgagtgggaagaaaggaatagagttcgtgagacaagagaaagagccgccgcttatgga
aatagagatacacaagggcagaagatgtccttgtatccaagcaaagataaatacgcagca
aaacctatacatgaacttgatctctctaactgtgacagttgctccccgagttaccggctt
cttccaaagaattatccaattcctttagcgagtcagaaaacagaaattggtgccgaagta
ttaaatgatcactgggtatctgtaacatcaggaagtgaggattactcttttaaacatatg
cgcaaaaaccagtatgaagaaagcttgttccgatgcgaagatgacaggtttgagctggat
atgcttttagagtctgtcaatgcgacaacacgacgtgttgaagaattgctcaacaaggtc
aatgataatactatctcgagtgatagtcatatccgtattgaagaacattttactgctctg
aatctaaggtgcattgaacgtctctacggtgaccacgggcttgatgttatggatgtgttg
aggaagaatgcaccacttgcccttccagttatactcactcgcttgaagcagaaacaggag
gagtgggcgaggtgtcgttctgattttaataaagtttgggctgagatttatgctaagaac
tatcacaaatcactggatcatcgtagcttttatttcaagcagcaggacacaaaaagcttg
agcactaaagccctgctggctgagatcaaagaaatcaatgaaaataagtgccaagaagat
gatgtgctgctatctgttgctgctggaaatgggcaaccaattatcgcacatctggagttc
gagtatcctgattctgacatccacgaagacctttatcaaatcatcaagtattcatgtata
gaagtttgtacaagagaacagttggataaagtcatgaagatttggaccaccttcctggaa
ccaatatttggagttcctcgtcagcctcagggtgaagtggatggtgtggatgttgtaaag
gctaaaaatctaaatgctaaagataaaacagcaattgaaggggaaagggtttgtagccct
gctagtggctcaggcatgaattgcagacaaagcagttccaggaatggagatgaactgcct
acatctgagcatttaatttcttccagagttcagatagcagatggcgaaaatgggtttaag
gatgatagctctcttcatgcaaatggtgtgatgctgaaaatcgttacttcaaagaacctc
cttcagcatggaaaggcagacgctaatctaaacatggcagatggggcatctggtctcagc
agagaggctttttgttctgaccagctagtgctttcaaacagcagtactgtgggggaaagc
catggaagagtctgtaaagaaattgtttcagggcatggtgcaggcacttccagaactagt
agttccacaatcaaacgtgaacctgagatagtatcgtctaatgactcaaaggacggaggg
ttcgtggacccaaaggcagaaggtatcaaagttgagaaatgtcttgaagaatccatagga
aaatgtaaacttgagagagaagagggtgaattaactccaaatggtgattttgaggataat
tttacaccatcaaatgaaggtggtcaaaatgcatcgcatagtttaaagggaagttcaagt
agtaagctgtaccaaagtggacatggagaaaaagaaattcgtggtggagacagaggatgt
gagaatgatgctaatgaagaaggggaagcgagtgctcatgggacatcagaggacagtgag
aatgcttctgaaaattgtgatgtttcaggcagtgagtctgctaatggcgaaggttctcat
gaagagcgtgaagaagatggggacaatgatgtgaatgataacaaggcagagagtgaagga
gaggtggaaggtactgctgatgtccacgatgctgaaggagatggtgctgttatgccattt
tcagaacgccttctacatacatccaggcctctgaccaagcacgttccttctatatttcat
gtcagggagaaggaatcacgtatattttatggaaacgattcattttatgtgctgttcaga
cttcaccagacattgtatgaaagactacagaaagcaaaattgcattcttcatcatctgaa
cacagatggcgagtctcaaatgctatcaaccccactgagtcatattccagattcaagagt
gcactttataacctgcttgatggttcctctgacaatgcaaagttcgaggatgactgccga
gctattattggagctcagtcatatcttctcttcaccttagacaagctgatatacaaaatt
gtcaaacagcttcagacaattgcaacagatgagttggaaagtaaacttcttcaactatat
gcatatgaaacctcaagaaattctagcacattttcggatttagtttaccatgaaaatgtg
cgtgcccttcttcatgacgagaccatatacagaatagcatgttcatctaaaccaacacgt
ctatccatacaactcatggactatgtttatgataagcctgagatgtctgctgtttcagtg
gacccaaattttgcagcttatttgagcaatgaactcctctctgctatacctcagaaggag
aaccctggggtgttcttgacaagaaataaacggaagtctggagttagagatgaaactttt
acatctgaggctatgaaaggacttaaattttttaatggtctagaatgtaagatagcatgc
agctcatcaaaggtctcttacgtcttggacactgaagatttcttgatccgttcaagaaaa
aggcgaaaaatattaaaggagaattttttgtctaatggccattcagagtgtttgaacagg
tctaataaaatacaacgcttccgcagattgttttcagttgaacatgtgcattttgcatag
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