Solanum dulcamara (climbing nightshade): 129880263
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Entry
129880263 CDS
T09577
Name
(RefSeq) DExH-box ATP-dependent RNA helicase DExH15 chloroplastic
KO
K26077
ATP-dependent RNA helicase ISE2 [EC:
5.6.2.6
]
Organism
sdul
Solanum dulcamara (climbing nightshade)
Brite
KEGG Orthology (KO) [BR:
sdul00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
sdul03041
]
129880263
Enzymes [BR:
sdul01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
129880263
Spliceosome [BR:
sdul03041
]
Other splicing related proteins
Spliceosome associated proteins (SAPs)
RNA helicase-like proteins
129880263
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DSHCT
DEAD
ResIII
DEXQc_Suv3
Helicase_C
AAA_22
IstB_IS21
Motif
Other DBs
NCBI-GeneID:
129880263
NCBI-ProteinID:
XP_055810196
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All DBs
Position
2:complement(9350991..9365212)
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AA seq
1157 aa
AA seq
DB search
MTTLPILFPSPANSITNHSPFPLLHVQTLRFFSLKSIQKNPFSSKSRIFYKFPRSIFPAE
SQDEDEDEDEDEDEEEDDDDDEAAEEYDDVYAEVSDGGEDSEDELESSVSSEVLNIDESR
RQRVEKLRNEVIEFGDGIIDANELASIYSFRIDKFQRLSIQAFLRGSSVVVSAPTSSGKT
LIAEAAAVATVARGRRLFYTTPLKALSNQKFREFCETFGESNVGLLTGDSAVNRDAQILI
MTTEILRNMLYQSVGIASSDGGLLHVDVIVLDEVHYLSDISRGTVWEEIVIYCPKEVQLI
CLSATVANPDELAGWIGQIHGRTELVTSTKRPVPLTWHFSTKTALLPLLDDKGTSMNRKL
SLNYLHYDESGSELYREEGSKRKKSRRRENDVRPLSKNDINNIRRSQVPQIIDTLWHLKA
RDMLPAVWFIFSRKGCDAAVQYLEDCRLLDECEMSEVELAFKKFRIQYPDAVRVSAVKGL
RRGVASHHAGCLPLWKSFIEELFQRGLVKVVFATETLAAGINMPARTAVISSLSKRGDSG
RIQLSSNELFQMAGRAGRRGIDEKGHVVLVQTPYEGPEECCKVLFSGLQPLVSQFTASYG
MVLNLVAGAKVTRRSTGLDEIKVTRAGRTLEEARKLIEQSFGNYVGSNVMLAAKEELARI
EKEIGTLTSEISEEAIDRKSQKLLTQSAYQEIAELQEELRAEKRLRTELRRKMELERVFS
LKPLLKELGDEHLPFMSLHYTDSDRVQHLVAAVYLGKVDTLNTEKLKSMVLDNEAFASKT
VVENLELGDNGGEDVKPSYHVALGSDNSWYLFTEKWIRMVYRAGFPNAALTLADALPREI
MGELLDKAEMQWQKLAVSEHGGLWCMEGSLETWSWSLNVQVLSSLSEDDEVLQLSQAYND
AVECYKSQRNKVSRLKKRIARTEGFKQYQKIIDSAKFTEEKIRRLKVRSKRLIGRIEQIE
PTGWKEFLQVSNVIHESRALDINTHVIFPLGETAAAIRGENELWLAMVLRNKLLLNLKPA
QLAAVLGSLVSEGIRLRPWKNNSFVYEPSTTVLNIIDLLEEQKSSLLELQEKHGVNIPCC
LDRQFTGMVEAWASGLTWKEIMTDCAMDEGDLARLLRRTIDLLAQVPKLPDIDPLLQINA
KSASNVMDRPPISELAG
NT seq
3474 nt
NT seq
+upstream
nt +downstream
nt
atgaccacactccctatcctcttcccttcacctgcaaactccataaccaatcactctcca
tttccacttcttcatgtacaaaccctacgattcttctccctcaagtcaattcagaagaat
ccattcagttctaaatctagaatcttctacaagtttccgaggtcaatttttccggcggag
tctcaagacgaagatgaagatgaagatgaagacgaagatgaagaagaagatgacgatgat
gatgaagcggcggaagagtacgacgacgtttatgcggaggtttcggatggaggcgaagac
agcgaagatgaactggaaagttccgttagtagtgaagtgttgaacattgacgaatcgaga
aggcagagagttgagaagcttcggaatgaagttatagagtttggtgatggaattattgat
gcgaatgaacttgcttctatttactcttttcgaattgacaaatttcagcgtttatcgatt
caagcttttttgagaggttcatctgttgtggtgtctgcgcctacaagtagcggcaaaact
ttgattgctgaagctgctgcagttgctacagtagctaggggaaggagactattctatact
actcctctgaaggctttatccaatcagaaatttcgagaattttgtgagacatttggtgaa
agtaatgtggggcttctcactggagattcagctgttaatagagatgcacagattttaatt
atgacaactgagattttgcgcaatatgctataccagagcgtagggattgcttcctcggat
ggtggtcttcttcatgttgatgtaattgttttggatgaagttcactatttaagtgacata
tctcggggcactgtttgggaagaaatagttatttattgcccaaaggaagttcaacttata
tgtctttcagcaactgttgctaatccagatgagttggctggatggattggtcagattcat
ggtaggacggagttggtaacatcaaccaagcgtccagttccattgacttggcacttctcc
acaaagacagctttattacctcttcttgatgacaaaggaacaagcatgaataggaagctg
tcactcaactacttacactatgatgaatcgggcagtgaactatacagggaagaaggatca
aaaagaaaaaaatcaagaagacgtgaaaatgatgttcgtcccctttcaaagaacgatata
aataatattcgccgctctcaggtacctcaaattatagacacactgtggcatctaaaggca
agggatatgcttccagcagtttggttcatctttagcaggaaaggatgtgatgcagctgtc
caatatcttgaagactgcaggttactggatgagtgtgaaatgagtgaagttgaactggca
ttcaagaagttccgtattcaataccctgatgctgtgcgtgtgtctgcagtgaaaggcctc
cgccgtggagtggcttcacatcatgctggatgtctccccctttggaaatcattcattgaa
gagttatttcagcgaggtctagttaaggttgtctttgctactgaaacacttgctgctggc
atcaatatgcctgctagaacagctgtcatttcatctctcagcaaaaggggagatagtgga
cgaatccagttaagctcaaatgaattattccaaatggctgggcgtgctggtcgtagaggt
attgatgaaaagggtcacgtggttcttgttcagactccttatgaagggcctgaggagtgc
tgcaaagttcttttttctgggcttcaacctcttgtttcacaatttaccgcctcgtatgga
atggtgcttaatctcgtagcgggggccaaagttacccgtagatcaactgggttagatgag
ataaaagtcacacgagcaggacggactttggaagaagcaaggaagttaattgagcagagt
tttggtaattatgtgggaagcaatgtcatgcttgccgcaaaagaggagcttgctagaata
gaaaaggaaatagggacacttacttcagaaatcagtgaggaagcaattgataggaagagc
cagaagctcttaacgcagtcagcatatcaggagattgctgaactccaagaagaattaaga
gctgaaaagcgtcttcgaactgaattgcgaagaaaaatggagctggaaagagtgttctcg
ttgaaacctttgttaaaggagctaggagatgaacaccttccattcatgtctttgcactac
accgacagtgacagggtacaacatttagttgctgctgtttatctggggaaggttgatact
ttgaatactgaaaagcttaaaagtatggtgttggacaatgaggcctttgcatcaaagaca
gtggtggaaaatcttgaacttggtgataatggaggtgaagatgttaaaccatcttatcat
gtggctcttggttcagataactcttggtatcttttcacagagaagtggattagaatggta
tacagagcaggctttccaaatgctgccttaactcttgctgatgctttgcctcgtgaaatt
atgggcgagcttcttgataaggcagagatgcagtggcagaagttagctgtgtctgaacat
ggaggtctatggtgtatggaaggttctttggagacatggtcttggagtttaaatgttcaa
gtcttgagtagtctatctgaagatgatgaggtcttgcaattatctcaagcatacaatgat
gcagtagaatgctacaagagccaaaggaataaggtctctcgtttgaaaaaaaggatagct
cgtacagagggctttaaacagtaccagaagataattgattcagctaagttcactgaggaa
aagattcgacggttgaaggttaggtcgaagcgtttgattggtcgtatagagcagattgag
ccaactggttggaaggaatttctgcaggtcagcaatgttatacatgaaagtagagcattg
gatatcaatacacacgtcattttccccctaggtgaaactgcagctgcaattcgaggagaa
aatgaactttggcttgcgatggttcttcgaaataaattgttgctgaacctaaaacctgca
cagttggctgcagttcttggtagtctagtttctgaaggcattaggcttcggccctggaaa
aataacagtttcgtttatgaaccctctaccactgtcttgaatatcatagacttactggaa
gaacaaaaaagttcacttctagagctccaggaaaagcatggtgtaaatattccttgctgc
ttggatagacaattcactggtatggttgaagcctgggcttctggtcttacttggaaagag
attatgacggactgtgcaatggatgaaggagatttggctcgccttctacggagaacgatt
gatttgttagctcaggttcccaaattgcctgatatagatccactgctgcaaattaatgcc
aagagtgcctctaacgtaatggaccgcccacctataagtgaattagcaggatga
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integrated database retrieval system
