Solanum dulcamara (climbing nightshade): 129880419
Help
Entry
129880419 CDS
T09577
Name
(RefSeq) probable pectate lyase 5
KO
K01728
pectate lyase [EC:
4.2.2.2
]
Organism
sdul
Solanum dulcamara (climbing nightshade)
Pathway
sdul00040
Pentose and glucuronate interconversions
sdul01100
Metabolic pathways
Brite
KEGG Orthology (KO) [BR:
sdul00001
]
09100 Metabolism
09101 Carbohydrate metabolism
00040 Pentose and glucuronate interconversions
129880419
Enzymes [BR:
sdul01000
]
4. Lyases
4.2 Carbon-oxygen lyases
4.2.2 Acting on polysaccharides
4.2.2.2 pectate lyase
129880419
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Pectate_lyase_4
Beta_helix
Motif
Other DBs
NCBI-GeneID:
129880419
NCBI-ProteinID:
XP_055810423
LinkDB
All DBs
Position
2:complement(20085147..20087666)
Genome browser
AA seq
401 aa
AA seq
DB search
MGMTLSFLLFLTLLSPIFTFSSHVSDPEVIVQEVNQKINASRRNLGYLSCGTGNPIDDCW
RCDPNWEKNRQRLADCAIGFGKQAIGGKDGKIYIVTDTSDDPVNPKPGTLRYGAIQDEPL
WIIFSRDMVIKLKEELMLNSFKTIDGRGASVHIAGGPCITIQYVTNIIIHGLNIHDCKQG
GNAYVRDSPQHYGWRTLSDGDGVSIFGGSHVWVDHCSLSNCRDGLIDAIRGSTAITISNN
YMTHHNKVMLLGHSDTFTRDKNMQVTIAFNHFGEGLVQRMPRCRHGYFHVVNNDYTHWEM
YAIGGSASPTINSQGNRFLAPNDVFNKEVTKHEDAAESEWKNWNWRSEGDLMLNGAFFTR
SGAGASSSYAKASSLSARPFTLVNSITMNAGALGCKKGKKC
NT seq
1206 nt
NT seq
+upstream
nt +downstream
nt
atgggaatgacactttcctttcttctctttctcactttattatctcctatcttcacattc
tcctctcatgtttctgatcctgaagttatagtccaagaagttaatcagaaaatcaatgca
tcaagaaggaacttaggctatttatcatgtggcacaggcaatcctattgatgattgttgg
agatgtgaccccaattgggaaaaaaacagacaaagattagctgattgtgccattggcttc
ggcaaacaagcaattggtggaaaagatggcaaaatctatatagttactgacactagtgat
gaccctgtgaacccaaagccaggaacattaagatatggtgcaattcaagatgaacccctt
tggataatattttctagagacatggtcattaagttaaaagaagaattaatgttgaattca
ttcaagactattgatggtagaggtgctagtgtacatattgctggtggtccatgtataact
atacaatatgttacaaatattattatacatggattaaatattcatgattgtaaacaaggt
ggtaatgcttatgttagagattcaccacaacattatggttggagaacattatcagatgga
gatggtgtttctatatttggtggaagtcatgtttgggtggatcattgttctttatcaaat
tgtagagatggtttgatcgatgcaattcgtggatctactgccattactatttccaataat
tatatgacacatcataataaggtaatgcttttggggcatagtgatacattcactagagac
aagaatatgcaagttaccattgcttttaaccattttggagaagggcttgtgcagaggatg
ccaagatgtagacatggatatttccatgtggtgaataatgactacactcattgggagatg
tatgcaattggaggaagtgcttctccaactatcaatagtcaaggcaatagatttcttgct
cctaatgatgtctttaacaaggaggtgacaaaacatgaggatgcagcagaaagtgaatgg
aagaattggaattggagatctgaaggtgatttaatgctcaatggagcttttttcacaaga
tctggtgctggagcttcttctagttatgctaaagcttcaagtttaagtgcaaggccattt
actttggttaattctattacaatgaatgctggtgcacttggttgcaaaaagggaaaaaaa
tgttga
DBGET
integrated database retrieval system
