Solanum dulcamara (climbing nightshade): 129880439
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Entry
129880439 CDS
T09577
Name
(RefSeq) DNA topoisomerase 3-alpha
KO
K03165
DNA topoisomerase III [EC:
5.6.2.1
]
Organism
sdul
Solanum dulcamara (climbing nightshade)
Pathway
sdul03440
Homologous recombination
sdul03460
Fanconi anemia pathway
Brite
KEGG Orthology (KO) [BR:
sdul00001
]
09120 Genetic Information Processing
09124 Replication and repair
03440 Homologous recombination
129880439
03460 Fanconi anemia pathway
129880439
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
sdul03032
]
129880439
03400 DNA repair and recombination proteins [BR:
sdul03400
]
129880439
Enzymes [BR:
sdul01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.1 DNA topoisomerase
129880439
DNA replication proteins [BR:
sdul03032
]
Eukaryotic type
DNA Topoisomerases
129880439
DNA repair and recombination proteins [BR:
sdul03400
]
Eukaryotic type
DSBR (double strand breaks repair)
HR (homologous recombination)
Bloom's syndrome complex (BTR)
129880439
FA (Fanconi anemia) pathway
129880439
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Topoisom_bac
Toprim
Zn_ribbon_GRF
Zn_ribbon_Top1
zf-CCHC
zf-CCHC_2
Zn_ribbon_GRF_2
Toprim_4
Motif
Other DBs
NCBI-GeneID:
129880439
NCBI-ProteinID:
XP_055810449
LinkDB
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Position
2:22314994..22378395
Genome browser
AA seq
917 aa
AA seq
DB search
MAGGGGREIRVLNVAEKPSVAKAVSGILSKNQPGGMRVRNGRSRYNKIFEFNYTIRNQPC
QMLFTSVTGHLMELEFDDRYRKWHSCDPLDLYNAPVRKFVPEDKLDIKRTLEAEARSCQW
IILWLDCDREGENIAFEVLDVCRQANHNLNVWRARFSALIDREIHQSVQTLVQPNQLFSD
AVDVRQEIDLRIGASFTRFQTMLLRGAFVLDFATDDRNLVLSYGPCQFPTLGFVVERYWE
IQAHEPEEFWTINCTHNSDEGTATFNWMRGHLFDYTCGVTIYEMCIQEPIATVTKVKQQE
KLKYPPHPLSTIELEKRASRYFRMSSEQTMKVAEDLYQNGFISYPRTETDCFSEKTDLRT
MVQEQEGHPVWGTYAQRLLDTQSGLWRNPNGGGHDDKAHPPIHPTKFSAGETRWSQDHHR
VYELVVRHFLACVSQPAVGAETIVEIDIAGESFSACGRVILAKNYLDVYRFESWGGSVIP
TYSFGQQFTPTTLTLDSGVTRPPPLLSEADLLGCMDKAGIGTDATMHDHIKKLLDRFYAI
KDSNTRFSPTKLGEALVMGYDDMGYELWKPYLRAMMECDMKAVSIGTKRKAEVLETCLQQ
MKACFSDARTNKGKLLEAMAIFFERSNRSSGGEQQAVGDVVRRCGLCLESDMVLRQKPDG
NFMVGCLGYPQCRNVVWLPGSLSEASVTENTCTSCSPGPVFKIQFKFRRLEIPPNYSVQH
LGCIGGCDDILRQLVEICGTGSRNSSNTSGRGQGNPTASSSAQRGNSRAQSSCAYCRQTG
HLSNDCPSQASRGRTAWSQEVDNGESSIPCNSCGAPCILRTANTANNRGRKFFSCQSQEC
NFFVWEDNLNGGRVERANTSASTSSGRGGRGRGRGRGQGGGHSSSVSFVSATGEPITGRC
FICGDPGHFANVCPRRG
NT seq
2754 nt
NT seq
+upstream
nt +downstream
nt
atggccggaggcggagggagggagataagggtactaaatgtggctgaaaagccgtcggtg
gccaaggcagtgtcggggatactatctaagaaccaaccaggtggcatgagagtaagaaac
ggacgttccaggtacaacaaaatctttgagttcaactacaccattcggaaccagccttgc
cagatgctgttcacctccgtcacaggccacctcatggagcttgagtttgacgatcgttac
cggaaatggcactcatgtgacccgctcgacctctataatgcgcctgttcggaagtttgtc
cccgaggataagttggatatcaaaaggacactggaggcagaagccagaagttgtcagtgg
attatattgtggctcgattgtgatagagaaggagaaaatattgcatttgaagtgttggat
gtatgtagacaagcaaatcataaccttaatgtgtggagagctcggttctctgccttaatt
gacagggaaattcaccaatcagtgcagactcttgttcagccaaatcagttattttctgat
gctgtagatgttcggcaagagattgatcttcgtataggagcttctttcacaagatttcag
acaatgcttctgagaggtgcatttgtccttgattttgctacagatgatagaaatcttgtc
ttaagctatggtccctgccagttccctacacttggctttgttgtggagcgatattgggaa
atacaagcacatgaacctgaagaattttggacaatcaactgtactcacaactcggatgaa
ggcactgctacctttaactggatgcgcggtcatctgtttgattacacatgtggagtaacg
atttatgagatgtgcatccaggaacccattgcaacagttaccaaggttaaacagcaggag
aaactcaaatacccccctcatcctttaagtacaattgagcttgaaaagcgtgcatccaga
tacttccgtatgagttccgagcagacaatgaaggtggcagaagatttatatcaaaatggt
tttatcagttatcctcgcacagaaactgattgcttctcggagaagaccgacttgcgtaca
atggtgcaagaacaagaaggtcatcctgtatggggcacatatgcgcagcgcctactagac
actcaatcaggactgtggagaaaccctaatggaggtgggcatgatgacaaggcccatcct
cctattcatccaactaaattttctgctggggaaaccagatggagccaggatcaccataga
gtgtacgagttggttgttcgccattttttggcctgtgtttctcaacctgctgttggggct
gaaactatagttgagattgatattgctggtgaatccttttctgcatgtgggagagtgata
cttgcaaaaaactaccttgatgtgtaccgatttgaatcatggggaggttcagtgatcccc
acatacagttttggtcaacagtttacaccaacaactttgacccttgattcaggagttaca
agacctcctccccttttaagtgaggctgatctattgggttgtatggacaaggctggcatt
ggaacagatgcaacaatgcacgatcatataaagaaactacttgatcgattttatgcaatt
aaggactcgaacactcggttctcgccaactaaactaggggaagcactagtaatgggatat
gatgatatgggttatgaactatggaaaccatatctccgtgctatgatggaatgtgatatg
aaagccgttagcataggaaccaagagaaaggctgaagttctagaaacttgcttgcagcag
atgaaagcttgcttttcagatgccagaacaaacaaaggaaagctccttgaggccatggct
atcttctttgaaagatcaaacagatccagcggtggcgagcaacaagcagttggagatgtt
gttcggagatgtggactttgtctagagtcagatatggtgctcagacaaaagccggatggg
aacttcatggttggttgcttgggttacccacaatgcagaaatgttgtctggctacctggg
tctctctcagaagcttctgttaccgagaatacgtgcactagctgcagtccaggacctgtt
ttcaagattcagtttaaatttcgacggctggaaataccgccaaattacagtgttcaacat
ttaggttgcattggtggctgtgatgatattcttaggcagcttgtagaaatttgcggaact
ggttctcgcaatagttccaacacttcaggtagaggacaaggaaaccctacagcatccagc
agtgcacaaagaggcaattccagagcacaaagttcttgtgcatactgcaggcaaacaggg
catttgtcaaatgattgtccttcacaggcttctcgtggtcgcactgcttggtctcaggaa
gttgacaatggagaatcttcaatcccttgtaattcatgtggagcgccttgcattttgcgc
actgccaatactgccaacaacaggggaagaaagttcttttcatgtcaatcacaggagtgc
aacttttttgtatgggaagataacctcaatggaggaagagtagaacgtgcaaatacttct
gcatctactagcagcggaagaggtggccgtggccgtggccgcggccgtggccagggtggt
gggcattccagtagtgtgtcatttgtgtcggcaacaggtgaaccaataactgggagatgt
ttcatctgtggtgatccaggtcattttgctaacgtttgcccacggcgtggttga
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