Solanum dulcamara (climbing nightshade): 129880587
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Entry
129880587 CDS
T09577
Name
(RefSeq) replication protein A 70 kDa DNA-binding subunit A
KO
K07466
replication factor A1
Organism
sdul
Solanum dulcamara (climbing nightshade)
Pathway
sdul03030
DNA replication
sdul03420
Nucleotide excision repair
sdul03430
Mismatch repair
sdul03440
Homologous recombination
sdul03460
Fanconi anemia pathway
Brite
KEGG Orthology (KO) [BR:
sdul00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
129880587
03420 Nucleotide excision repair
129880587
03430 Mismatch repair
129880587
03440 Homologous recombination
129880587
03460 Fanconi anemia pathway
129880587
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03000 Transcription factors [BR:
sdul03000
]
129880587
03032 DNA replication proteins [BR:
sdul03032
]
129880587
03400 DNA repair and recombination proteins [BR:
sdul03400
]
129880587
Transcription factors [BR:
sdul03000
]
Eukaryotic type
Zinc finger
Cys2His2 others
129880587
DNA replication proteins [BR:
sdul03032
]
Eukaryotic type
DNA Replication Elongation Factors
RPA (replication protein A)
129880587
DNA repair and recombination proteins [BR:
sdul03400
]
Eukaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
RPA (replication factor A)
129880587
MMR (mismatch excision repair)
129880587
DSBR (double strand breaks repair)
HR (homologous recombination)
129880587
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Rep_fac-A_C
REPA_OB_2
Rep-A_N
tRNA_anti-codon
DUF223
zf-like
Fer4_9
Motif
Other DBs
NCBI-GeneID:
129880587
NCBI-ProteinID:
XP_055810654
LinkDB
All DBs
Position
2:58540453..58544515
Genome browser
AA seq
640 aa
AA seq
DB search
MPVNLTASAISAINAGDVNSKPVVQVLDIKLIGTTQERYRLTLSDSESTQQAMLATQLND
RVKTGCVRKTSVIQLIEYICSTVQNRKIIVVLNMETIIPECEIIGNPKVIVESNLGTQKT
ISSGASGSAILSNNGNLSAQRSGQASFANSKKLSAQNLGNSMQNYPPAIQPAYQPPPNYK
SHGAIMKNEAPARIIPIAALNPYQGRWAIKARVTAKGGLRRYNNSRGDGKVFSFDLLDSD
GGEIRATCFNAVVDRFYDKIEAGKVYMISKGSLKLAQKNFNHLKNEWEIFLETTSTVDLC
PDEDASIPRQQFSFRPISEIESSENNSIIDVIGIVTAVNPSVPILRKNGMETQRRILNLK
DQSGRSVELTLWGDFCNREGQNLQELAEAGFSPVLAVKAAKVSDFTGKSIGTISSTQMFI
NPESAEVQTLREWFDQGGKDTASQSISRDNMPVGSKNEIRKTVSQIKDEGLGRSDKPDWV
TVKATITFIKTDTFCYTACPLMIGDRQCNKKITRSENSRWQCDRCNQAFEECDYRYLLQA
QIQDHTGLTWVTTFQESGEEILGCPAKELYMMKYEEADDTRFSEIIRNCLFTQFLFRLKI
KEEFYGDEQRVKITVVKAEKVNHSAESRYLIDFISKFRLS
NT seq
1923 nt
NT seq
+upstream
nt +downstream
nt
atgccggtgaacttgacggctagcgcgatctcggcgatcaacgccggcgatgtgaactca
aagccagtggttcaggtattggacatcaagctaatcggcaccacacaagaacggtaccga
ctcacgctctccgactctgagtcgactcagcaggctatgctggctactcagctcaatgac
cgagtcaaaactggctgtgttcggaaaacatccgtcattcagttgattgaatacatctgt
agcactgttcaaaatcgcaaaatcattgttgtcctcaacatggaaactattataccagaa
tgtgaaataattgggaacccaaaagtgattgtagaatctaatttaggaactcagaaaact
atatctagtggagcttctgggtctgcaatcttgagtaacaatggtaacttgagtgctcaa
agatctggccaagcaagctttgctaacagtaaaaagttgagtgcccaaaatttaggtaat
agcatgcagaactatccacctgcaattcaacctgcatatcaacctcctccaaattacaaa
agccatggggcaatcatgaagaatgaagcacccgcccgcattattccaattgcagcattg
aatccctatcagggtcggtgggctattaaggctagagtgactgcaaaggggggtctacgt
cgctataataattctagaggagatggcaaggtcttctcctttgatctccttgactctgat
ggtggtgaaatacgtgccacttgttttaatgctgtagttgatcgcttttatgacaaaatt
gaagctggaaaagtgtacatgatatcaaaaggcagcttgaaactcgctcagaagaacttc
aaccatctgaagaatgaatgggaaatatttttggagacaacttctacagtagatctctgt
ccagatgaagatgcctctataccaagacaacagttctcatttagacctattagtgaaatt
gaaagttcagaaaacaattcaatcatagatgttattggaattgtgacagcagtcaatcct
tctgttcctatcctgagaaagaatggaatggaaactcaaagaagaatcttgaatttaaag
gatcagtctgggagaagtgttgagctgacactatggggagatttctgtaacagggaaggt
caaaacctgcaagaactggcagaagctggtttttcccctgttttagctgttaaagctgca
aaagttagtgacttcactgggaaatccattggaaccatatcttccacgcaaatgttcata
aatccagaatctgctgaggttcagactctgagagagtggtttgatcaggggggaaaagac
actgcttctcaatctatatctagggacaacatgcctgtaggatcaaaaaatgagatacgt
aagactgtctctcagatcaaggatgaagggcttggtaggtcagataaaccagactgggtt
acagttaaggcaaccataacattcatcaaaactgacactttctgttatactgcttgccct
ttgatgattggagatagacaatgtaataagaagattaccaggtcagaaaactccagatgg
caatgtgataggtgcaatcaagcatttgaggaatgtgattacagataccttcttcaagct
caaattcaagatcatactgggttgacatgggtgacaactttccaggaatctggcgaagag
attttaggctgtcctgcgaaggagctgtacatgatgaaatatgaagaagctgatgatacc
agattttctgaaattattagaaactgtctcttcacacaatttctgttcaggctaaaaatc
aaagaggaattttatggtgatgagcagagggtgaaaattacagttgtcaaggcagagaaa
gtgaaccattctgcggaaagcagatatctcattgattttatttcaaaattccgtctttct
tga
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