Solanum dulcamara (climbing nightshade): 129880651
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Entry
129880651 CDS
T09577
Name
(RefSeq) uncharacterized protein LOC129880651
KO
K11985
TRAF-interacting protein [EC:
2.3.2.27
]
Organism
sdul
Solanum dulcamara (climbing nightshade)
Brite
KEGG Orthology (KO) [BR:
sdul00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04121 Ubiquitin system [BR:
sdul04121
]
129880651
Enzymes [BR:
sdul01000
]
2. Transferases
2.3 Acyltransferases
2.3.2 Aminoacyltransferases
2.3.2.27 RING-type E3 ubiquitin transferase
129880651
Ubiquitin system [BR:
sdul04121
]
Ubiquitin ligases (E3)
Single Ring-finger type E3
Other single Ring-finger type E3
129880651
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
zf-RING_2
zf-RING_UBOX
zf-C3HC4
zf-RING_5
zf-rbx1
zf-ANAPC11
zf-C3HC4_2
zf-RING_11
zf-RING_16
Lectin_N
FANCL_C
zf_RING_Vps8
zf-RING_Vps41
Motif
Other DBs
NCBI-GeneID:
129880651
NCBI-ProteinID:
XP_055810753
LinkDB
All DBs
Position
2:69202473..69213058
Genome browser
AA seq
531 aa
AA seq
DB search
MTHKQKKGGDREMVGVNSFGKTICSICYEDLNPIIEDLQSVTICGHVFHELCLQQWFEYC
AKGKKKNCPVCKQACSEENANRLYFQSIGDPNGTSLTQKPCDYKEDQRELTNEVKRLERK
VLRLTSTLEKQQKDLKEVNAELFTCKEELKMEMTLKIEAVKQEAAIQQLLHLKSKELDQL
ALECIRLQDRNMALAKELATLKLVCDFNLEEEEVLKRASLEDNVNSKETIDVLKKSLVIR
NMNYKELMTKCNALDRREARSLRKLQKTKEKKNNLKARVQELEIALEGKDSEILRISRAS
KKNYQGSKEPKVDRCSYENQNKAPTETEVDLCIITGSCDDLSRRRRKRKFKCKDKSIPNM
AEDIIASSLHKNNHEKDSSIRNKDGGTSETSTYVHEGSYQNLHQPFDPKKAVHDSFLSRP
EAVFGATGGSLVHGSGNKDGMSGSRNCSKNSTENMPPVIILDDDDDLPPFEDITPHQPTF
HIRKETTSPVVLAQPGDSCFSGGLLGPDGTYWHLGKWCKKRYKDKGSGSLS
NT seq
1596 nt
NT seq
+upstream
nt +downstream
nt
atgacccacaaacagaaaaaaggaggagacagagaaatggttggagtgaatagttttggg
aaaaccatttgctcaatctgctatgaagatctaaaccctattatcgaagatcttcaatcc
gttactatttgtggtcatgtttttcacgagctatgtcttcagcaatggtttgaatactgc
gcaaaaggaaaaaagaagaattgcccagtttgcaaacaggcttgttcagaagaaaatgca
aataggctttatttccaatctattggtgatccaaatggtacaagtcttacgcagaagcct
tgtgattataaagaggatcaacgggagttgacaaatgaggtcaaaagattggagaggaaa
gttttacgactgacttccacgctggaaaagcagcagaaagatctcaaagaagtcaacgca
gagctgttcacatgcaaggaggagttgaaaatggaaatgactctaaagattgaagctgta
aaacaagaagcagccattcaacagttgctccatcttaaatcaaaggagctagatcaatta
gctttggagtgcataaggctacaagatagaaatatggccctagctaaggagcttgcaaca
ctcaagttagtctgcgattttaacttggaggaagaggaggtcttgaaacgtgcttcgtta
gaagataatgtcaatagcaaagagacaattgatgtcttgaaaaaatcattggtcatccgt
aacatgaattacaaagaactgatgaccaagtgcaacgctctagacaggcgagaggctcgt
tctctcaggaaactgcagaaaactaaagagaagaaaaataatttgaaggccagggtccaa
gaacttgagatagcacttgaaggaaaagatagtgaaattttgagaatttcgagagcctcc
aagaaaaactatcagggaagtaaagaacccaaagttgatagatgttcatatgagaatcag
aataaggcacctactgagacagaagtagatttatgcatcatcactggctcatgtgatgat
ttatctagacgaaggagaaaaagaaagtttaagtgtaaggataagagtataccaaacatg
gcagaagatattatagctagcagtcttcacaaaaataatcatgagaaagactcttccata
agaaacaaagatggaggcacttcagagacttccacttatgtgcatgaaggatcatatcaa
aacttgcaccaaccatttgaccctaagaaggctgttcatgatagtttcttgtcaaggcca
gaggcagtttttggggccactggtggaagtctagtgcacggatcaggaaataaggatgga
atgtcgggatcaaggaattgtagtaagaacagtactgaaaacatgcccccggtgattatt
cttgatgatgatgatgatcttccgccttttgaagacattacaccgcaccagcccacattt
cacatcaggaaagagacgacttcaccagttgtacttgctcaaccaggagacagctgcttt
tctggtggattgttaggtcctgatgggacttactggcacttgggaaaatggtgtaagaaa
aggtacaaggacaagggatctggatcgctgtcttga
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