Solanum dulcamara (climbing nightshade): 129880699
Help
Entry
129880699 CDS
T09577
Name
(RefSeq) uncharacterized protein LOC129880699 isoform X1
KO
K20178
vacuolar protein sorting-associated protein 8
Organism
sdul
Solanum dulcamara (climbing nightshade)
Pathway
sdul04148
Efferocytosis
Brite
KEGG Orthology (KO) [BR:
sdul00001
]
09140 Cellular Processes
09141 Transport and catabolism
04148 Efferocytosis
129880699
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04131 Membrane trafficking [BR:
sdul04131
]
129880699
Membrane trafficking [BR:
sdul04131
]
Endosome - Lysosome transport
Tethering complex
CORVET complex
129880699
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
TPR_Vps8
Beta-prop_VPS8
TPR_Vps41
VPS8_N
TPR_VPS8_2
Clathrin
ANAPC4_WD40
Beta-prop_EML_2
WD40_CDC20-Fz
Beta-prop_EML
Beta-prop_TEP1_2nd
WDR55
zf_RING_Vps8
WD40_WDHD1_1st
WD40
WD40_Prp19
zf-RING_Vps41
Beta-prop_HPS5
Beta-prop_RIG_2nd
zf-RING_2
Motif
Other DBs
NCBI-GeneID:
129880699
NCBI-ProteinID:
XP_055810834
LinkDB
All DBs
Position
2:72666273..72696944
Genome browser
AA seq
1915 aa
AA seq
DB search
MELDLNSFLESHSDDDDDDHLLHHRTVDEILLNHSSSSSSSSPSPPSSPSALHGRNYLDG
RNRSAESSFQSLKLPLKLHQTEPRAESISSKQSSEFSSPPAGQSVLPSFFSGVIRSNSKP
GDALAAAFAASRSIPAPRAAAIKSRKASSGVLQMALESDQSAPIAPPVRIDADISDRNLD
NFGHSVILHEIGSETIGLEGNRKDQFQVAQVQLSDTDNDNMEAFTLDAGQDNMNVADAGD
ISVGDDFSVKSNLKEALSYTGTQVESPSRTEKDSISHDSPGLDEIEDRQVQSLFGGEDNV
VSADSSEEAAIKEILSSPVYKTLSDEDLTKKDGARHGHENVIPQSKEGEVSSNGDEADSL
QIPQSKEGEVSSNGDEADSLQQESMRDSTKPQKNYHSALKPLELAEEAEKKQAFTAMHLE
EGASAQPMRLHGVHRSSNVLGYFDVDDNNTITQTLLSQAFSREHGSSQVLAVHLKYIAVG
MSKGSILLMPSRYSSHHADNMDAKMLIFGVPGDRSHVPVTCLSFNQQGDMLFAGYGDGHY
TVWDVQRASVLKVVTEHKAPVVHLLYLGQDSQVTRQFTVLSGDTKGVVNLDRFTVYPLFN
RISLSKSQELLNESNSTTLCAVTLLSGESYGGAMVASQEGGGPSLIEEGVVILGTHQSAL
VAKLSPTFKVYAKIPRPDGVREGSMPYAAWKSESMSTETSEKVSLLAIAWDRRVQVAKLV
KSELKVCWRWTTDSSAVGLAWLDEQILVILTTTGQLCLFSKDGNLIHQRSFSMNGSCGED
LMSYHTYFSNVFGNPEKAHHNCLGVRGATLYILRPSQLVVSRLLSWKERIEVLHKAGDWT
SALNMAMSLYDGQAHAVIDLPKNLDDVQKTLMPHLVQLLLSYVDEVFSYIAVTSGNQHGQ
SGQSNELKYDADFVNPDIKEQYTLVGGVSVEFCLHIKRLDVLFDEIFPKYAAVNHKDTFL
ELLEPYILKDMLGSLPPEIMQALVEHYSSKGWLQRVEQCVLHMDMLSLDFNQVVRLCREH
RLHGALIYLFNKGLDDFRTPLEELFLILRDCTRESATALGYKMLVYLKYCFQGFAFPPGR
GTLPSTRVPSLKRELVQFLLEEASSPNSSTAMCLPYSGPNPNLLSLLELDTEATLDVLRY
AFVEGENESYSPAWNPANSKTETTEVDISTIEGVNLVQKVVDVLAVILNLSYFQTGGSFN
NKDERFTDIWPTRKDTEYILDFISFLTASEKAKVSKDTLHQIFEYLTLGNETYPNVSGRI
VETFNRKQKQLTALLEVLPEEDWDAHYLLNLCERAQLHQVCGLIHAITHQYLSALDSYMK
AVDDRILAFIFVDEMLRQPRDEQSDAFRSAVISRIPDLLKLNREGTFLLIVNHFGEESDY
ILDQLRSNPESLFVYLKTLIEVHSTGTLNFSSLRKDNASDFPSGRKKKHMSSEVYLETLS
DLPKLLQNYPIHITDEMTELYIELLCRYERKSVLRFLETSESYRVERCLHLCQEYGVIDA
AAFLLERVGDIGSALLLVISSLNDKFILLDTAVGNEHCDTAPEHFKAILSKKEVTDIIEI
LRTCIGLCQRNSPRLDPDEAESLWFQLLDSFCEPLMDSHDHIIRNKEECVQEGERACKIQ
WKVSKSHRNAHILRKLLSVFIKEIVEGMIGYVSLPRIILKLLSDNETQEFGDFKPTILGM
LGTYDFERRILDTAKSLIEDDTYSSLSLLKRGASHGFAPRNLLCCICNCPLTKDFSASSI
QIFSCGHATHLQCEPQESEASFRGNSIGCPICMPRKNSEKLRSKSMLVENGLVKSISKSH
QTNGMTGLYPHENDGFDNSYGLQSVSRFDLLLNLQKSHQSMQIENIPLLRLAPPAVYHEK
VKKRNVPSAGESSNDLAKPEKPSRSKHLRDVKLKGTSLRFPLKTNIFGKEKNIKL
NT seq
5748 nt
NT seq
+upstream
nt +downstream
nt
atggagcttgacctgaattcgtttttagaatcacattctgatgatgacgatgatgatcac
ttactgcatcatcgcactgttgatgaaattctcctcaaccactcctcctcctcttcttct
tcttcgccttctcctccttcttctccatctgctttgcatggacgcaattatctagatggt
cgcaatcgctcggcagaatcgtcttttcaatccctgaaactgccattaaagttgcatcag
acagagcctagagcggagtcaattagtagtaaacaatcgagtgaattttcttcaccacca
gcaggccagagcgtgttgccatcatttttcagcggggtcatcagatcaaattcaaaaccc
ggagatgcattggctgcggctttcgctgcatcacgctccattcccgcacctcgtgcagca
gccatcaaatccagaaaagcaagctccggagtgctgcaaatggccttggaaagtgatcaa
tcggctcccatagctcctccagttcgcattgatgccgacatttctgacagaaatctcgat
aattttgggcactcggtgattttacacgagattggttctgagactattggattggaaggt
aacagaaaggatcagtttcaagttgctcaagttcaactaagtgatacagacaatgataat
atggaggcatttacattggatgcaggtcaggacaatatgaatgttgctgatgcaggtgat
atttctgtgggggatgatttttcagttaaaagtaatttgaaggaagctctaagttatact
ggaactcaagtggaatctcctagtagaactgaaaaagactcgatttctcatgatagccct
gggttggatgagattgaagatagacaagttcaatctttatttggaggtgaagataatgtt
gtaagtgcggatagcagcgaagaggctgctataaaggagatactctcttctccagtttat
aaaactctttctgacgaagatttgactaaaaaggatggtgcaagacatgggcatgagaat
gtaattcctcaatccaaagaaggagaggtcagttccaatggagatgaagccgattcttta
cagattcctcaatccaaagaaggagaggtcagttccaatggagatgaagccgattcttta
cagcaggaaagtatgagggatagtacaaagcctcagaaaaattaccactctgccttgaag
cccctagaattggctgaggaagctgaaaagaagcaggccttcacggctatgcatttagaa
gagggtgcttctgctcaaccaatgaggcttcatggagttcataggagttctaatgtcttg
ggttactttgatgtagatgacaacaataccatcacccaaaccctgttatctcaagctttc
agtcgtgagcatggatcttcgcaggtcctggctgttcacctcaaatacattgcggtggga
atgtccaaaggatcaattcttctgatgccaagcagatactcctcacatcatgctgataac
atggatgctaagatgttgatatttggagtaccaggagatagatctcatgtccctgtaact
tgcttgagctttaatcagcaaggggacatgctctttgcaggatatggtgatgggcattat
actgtatgggatgtgcaaagggcctctgtgcttaaagttgtcactgaacataaagctcca
gttgtgcaccttttatatttagggcaagattctcaagttactcgacagtttactgtgctc
agcggtgatactaaaggtgtagttaacttagaccggtttacagtgtatcccttgttcaat
agaatctccctttcgaagtcacaggaactgttaaatgaaagcaacagcactacattatgt
gctgtgacactactatctggtgaaagttatggaggtgctatggtggcttctcaagaggga
ggcggcccttctttgattgaggaaggtgtggtcatacttggcacacaccaatctgctcta
gtggcaaaattaagccccacatttaaagtttatgctaaaattccacgtcctgatggtgtt
agggagggttcaatgccctatgctgcttggaaatcagaaagtatgtccactgaaacatca
gaaaaagtttcactgcttgcaattgcttgggatcgaagagttcaggttgctaagctggtg
aaatcagagctaaaagtttgttggagatggactacggatagctcagcagttgggctggca
tggttggatgaacagattttggtaattctcacaacaactggacagctttgtttgttttca
aaagatgggaatttgatccaccagagaagtttttctatgaatggatcttgtggagaggat
ctcatgtcataccatacctacttcagcaatgtctttggaaatcctgaaaaagcgcatcac
aattgtttaggtgtcaggggggcaactttgtacattcttcggccatcccagcttgttgtt
tctcgccttctttcctggaaggaacgaatagaagttttacataaagcaggtgactggacg
agtgcactgaacatggcaatgtctctttatgatggtcaagcacatgcagttattgacctt
ccaaagaatttggatgatgtgcagaagactcttatgccacatcttgtacaactgctgttg
tcatatgtagatgaggtattctcctacatagcagtgacatctggcaaccaacatgggcag
tcaggccaatcaaatgaattgaagtatgatgctgactttgtgaatcctgatattaaggag
cagtacactctggttggtggtgtttccgttgaattttgtcttcatatcaagagacttgat
gttctctttgacgaaatttttccaaagtatgctgctgtgaatcacaaggatacatttttg
gagcttctggagccatatatattgaaagacatgctaggatctttaccacctgagataatg
caagcactagtggagcactatagctctaaaggttggttacagcgtgttgaacagtgtgtt
ctccacatggacatgttgtccctggatttcaatcaggttgttcgcctatgcagggagcat
aggctgcatggtgcattgatctacttgttcaacaaaggtcttgatgattttaggactcct
ttggaagagctctttttaattttgcgggattgtaccagagaaagtgctactgctcttggg
tacaagatgcttgtttacctcaagtactgcttccaaggttttgcttttcctccagggcgc
ggaacactcccttccacacgtgtgccatctcttaaaagagagcttgtgcaatttttgttg
gaggaagcgagttctccaaattcttcgacagcaatgtgcttaccttacagtggaccgaac
ccaaacctgctctctctgttagagctcgacacagaggccaccttagatgttttgcgctat
gcatttgtagaaggtgaaaatgaaagttacagtcctgcatggaatccagccaattcaaag
acggaaacaactgaagtagacatttcaactattgaaggcgtaaacttagttcagaaagta
gtagatgtccttgcggtcattcttaatctgagttatttccaaactggtggttcttttaat
aataaagatgaaagatttaccgacatttggcctacaaggaaagatactgagtacatatta
gattttatttcctttttaactgcctctgaaaaagctaaagtttcaaaagatacccttcat
caaatttttgagtatctgacactgggtaatgaaacttaccccaatgtttctgggcggata
gttgaaaccttcaataggaaacagaagcaactgactgcacttttagaagttttgccagag
gaagactgggatgcacattacttgctgaatttatgtgagagggctcagctgcatcaggtc
tgcggcttaattcacgccatcacacatcagtatctttctgctttggacagttatatgaaa
gctgttgatgaccgtattcttgctttcatatttgttgatgaaatgctgcggcaaccgaga
gacgaacaatctgatgctttcagatcagcagtcatttctcgaatcccagatctactcaag
ttgaacagggaaggaacttttttactgattgtcaaccattttggagaggagagcgattac
attttggatcagctgcggtctaatccagaaagtcttttcgtttatctgaagacacttatt
gaagttcattcaacaggcaccctaaacttctcttctttaagaaaagataatgcttcagac
ttccccagtggaagaaagaagaaacatatgtcctctgaagtctacctggaaaccttgtct
gacttacctaagctcctgcagaactatccaatccacataactgatgaaatgacggagctt
tatattgagctattatgtaggtatgagcgtaagtcagttctcagattcttggagacttcc
gaaagctatagggtggagcgctgtttgcatttatgccaggagtatggagttatagatgca
gctgctttcttgttagaaagggttggtgacatcggaagcgcccttttgcttgttatatct
tcactcaatgataaattcatcctgcttgatactgctgttggaaatgaacattgtgatacg
gctccggagcatttcaaagctattttaagcaagaaagaggtcactgacataatagagatt
ttacgcacttgtattggcctgtgccagaggaacagcccccgattggaccccgatgaagca
gagagtctgtggtttcaattgcttgattctttttgtgagcctttgatggattcacatgat
catataataagaaataaagaagaatgcgtgcaagaaggcgagcgggcttgcaaaattcag
tggaaggtatcaaaatctcatagaaatgctcacatcctcaggaaattgctctctgtgttt
atcaaagagattgttgaaggaatgattggatatgtaagcctcccgaggatcatattaaag
cttctttcagataacgagacacaggaatttggtgatttcaaacctactatactggggatg
cttggaacatatgattttgagaggcggattttggataccgctaaatcattgattgaagat
gatacgtattcctccttgagcttactgaagagaggagcttctcatggatttgcacctcgg
aatctcctatgttgcatttgtaactgtcccctcacaaaagatttctcagcttctagcatt
caaatttttagttgtggtcatgctacacatctgcaatgcgaacctcaggaaagtgaagca
tcattcaggggtaactcaataggatgtcctatttgtatgccaagaaagaattcggagaag
ttgagaagtaaatctatgcttgtggagaatggattggtgaagtctatatcaaaatcccat
caaacaaatgggatgactggtctatatccgcacgagaatgatggtttcgacaactcctat
ggacttcagtccgtttcaaggtttgacctcctccttaatcttcaaaaaagccaccagtca
atgcaaatagagaatatccctctgttgaggcttgcaccacctgctgtgtaccatgaaaag
gttaagaaaagaaatgttccctcagctggagaaagcagcaatgatctggcaaaaccggag
aaaccaagcaggagcaagcatctcagagatgtaaaactgaagggaacatctttaaggttc
cccctaaaaacaaatatatttggtaaagagaagaacattaagctgtga
DBGET
integrated database retrieval system
