Solanum dulcamara (climbing nightshade): 129880963
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Entry
129880963 CDS
T09577
Name
(RefSeq) DNA repair protein RAD50 isoform X1
KO
K10866
DNA repair protein RAD50 [EC:3.6.-.-]
Organism
sdul
Solanum dulcamara (climbing nightshade)
Pathway
sdul03440
Homologous recombination
sdul03450
Non-homologous end-joining
Brite
KEGG Orthology (KO) [BR:
sdul00001
]
09120 Genetic Information Processing
09124 Replication and repair
03440 Homologous recombination
129880963
03450 Non-homologous end-joining
129880963
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
sdul03032
]
129880963
03400 DNA repair and recombination proteins [BR:
sdul03400
]
129880963
DNA replication proteins [BR:
sdul03032
]
Eukaryotic type
DNA Replication Termination Factors
MRN complex
129880963
DNA repair and recombination proteins [BR:
sdul03400
]
Eukaryotic type
DSBR (double strand breaks repair)
HR (homologous recombination)
MRN(MRX) complex
129880963
BRCA1-C complex
129880963
NHEJ (non-homologous end-joining)
MRX complex
129880963
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
AAA_23
SMC_N
AAA_15
AAA_21
Rad50_zn_hook
SbcC_Walker_B
AAA_29
ABC_tran
AAA_16
Motif
Other DBs
NCBI-GeneID:
129880963
NCBI-ProteinID:
XP_055811219
LinkDB
All DBs
Position
2:80115693..80145562
Genome browser
AA seq
1316 aa
AA seq
DB search
MSTVDKMLIKGIRSFDPENKNVITFFRPLTLIVGPNGAGKTTIIECLKVACTGEMPPNAR
SGHSFIHDPKVAGETETKGQIKLRFKTAAGKDVVCIRSFQLTQKATKMEYKAIESVLQTI
NPHTGEKVCLSYRCADMDREIPALMGVSKAILENVIFVHQDEANWPLQDPSTLKKKFDDI
FSATRYTKALEVIKKLHKDQSQEIKTYKLKLENLQTLKDAAYKLRESIAQDKEKTEALKS
QMEELEKEIQTLDSKIHHTEATLKDLHQLQRDIATKNAERSTLFKEKEKQYAALAEENED
TDEELMEWKTKFDERIALLESKISKLEREMNDSEAKSSFLKQSITNYIMEISKLQADAEA
HAELKNERDVTLRKLFDRHNLGAVPTGSLSDDVATNLTNRIKLRLTHFDKDFQEKKKSNE
AEIAAAWHQYDIANREWSEKEAQKQAKADIKDGILKRIKEKEDERDVLERQISDVNVAHL
DEREKKMQIESERKSKQLAEREFDLNIRQKQTEMYTVDQKLKDLRDEKDHMAAESEDRIK
LSLKKSELQIFEKNHKKIMDDNKDKIKGVLKGRLPSDKDLKNEITQAQRALQREVDDLSV
KAREAEKEVNMLQMKIEEVNHNLTKYHKDMDSRKRFLESKLQLMDQEFAGIESYPKIMDS
VKEKRDVQKSKFNIADGMRQMFDPFERVARAHHICPCCERPFSAEEEDEFVKKQRVKAAS
SAEHIKVLAMESSNADSRFQQIDKLRLVYEEYVKVGKESIPQAEKNLNELNEELDQKNQA
LDDVLGVLAQIKAEKDAVDALIQPVETSDRLFQEIQARQKQVDDLEYGLDIRGQGVRSME
EIQSELDDLQSKKDNLYTEVEKLRNDQRYMENEYASFQLRWANVREEKSRVANRLEQIKR
IEEELDRFVEEKNQIELEEKHLAEAFGSLLKEKDKYFRDHEDLKTKLGEQLEEQAEIRRN
YQQEVDTLLKITSKIKEYYDLKKEHRLNELQDKRSLSEAQLQSCESRKDEILAEVKKSKD
LMGNQDSLRRNIEDNLNYRKTKAEVDELTQGIELLEDKVLTLGGFSTVEAELKKLSHERE
RLLSELNKCHGTLSVYQSNISKNKVDLKQAQYKDIDKRYFDQLIQLKTTEMANKDLDRYY
SALDKALMRFHSMKMEEINKIIRELWQQTYRGQDIDYISIHSDSEGSGTRSYSYKVLMQT
GDTELEMRGRCSAGQKVLASLIIRLALAETFCLNCGILALDEPTTNLDGPNSESLAAALL
RIMEDRKGQENFQLIVITHDERFAQYIGQRQHAEKYYRITKDDHQHSIIEAQEIFD
NT seq
3951 nt
NT seq
+upstream
nt +downstream
nt
atgagcactgtagataagatgctcataaagggcatccggagttttgacccggagaacaaa
aatgtcatcacctttttccgaccattaaccctcatcgtcggccctaacggcgccggaaaa
accactataattgagtgcttgaaggtcgcctgtactggtgagatgccgccaaatgctcgc
tctggtcatagctttatccacgaccctaaggtggctggagagacggagacaaaggggcag
ataaagttacgcttcaagacagcagcagggaaagatgtggtgtgcattaggtcttttcag
ctaactcagaaggcaacaaagatggaatacaaggccattgagagcgttctacagactata
aatcctcacacaggagagaaagtttgcctaagttatagatgtgccgatatggaccgagaa
atccctgctctcatgggtgtctcaaaggccattcttgaaaatgtgatatttgttcaccaa
gatgaggcaaactggccattacaagatccgtctacgctgaaaaagaagtttgatgatatc
ttctctgctactagatacacaaaggcattggaggttatcaaaaagcttcacaaggatcaa
tctcaagaaataaagacatataagttgaaactggagaatcttcagacattgaaagatgct
gcttacaagttgagggaaagcattgctcaagacaaagagaaaacagaggcactgaaaagt
cagatggaggagcttgaaaaagagattcagactctagatagtaagatccaccatactgaa
gcaactttaaaggaccttcatcaattgcagcgagacatagccaccaaaaatgctgaaagg
agcacattgttcaaggaaaaggaaaagcaatatgcagcccttgcagaggagaatgaagac
actgatgaagagctgatggagtggaagacaaagtttgatgaaaggatagcgcttctggaa
tcaaagattagcaagttggagagggaaatgaatgactcagaagcaaagagttccttcctt
aagcagtccataacaaactatatcatggagatcagcaagcttcaagctgatgctgaagct
catgcagagttaaaaaatgaaagagacgtcactctcaggaagctttttgacagacacaac
ttaggggctgttccaactgggtcactcagtgatgatgttgctacgaatttaacaaatcgt
atcaaactacgattaacacattttgataaagattttcaagaaaaaaagaaatcgaatgag
gcagaaattgcagctgcatggcatcaatacgacattgcaaaccgcgaatggagcgaaaag
gaggcgcaaaaacaggctaaagcagatattaaggacggcattttaaagcgcattaaagag
aaagaggatgaacgtgatgtgcttgaacgtcagatttctgatgttaatgtggctcatctt
gatgagagggaaaagaaaatgcaaattgaatctgagaggaagtctaagcagcttgcagaa
agagaatttgacttgaacataaggcaaaaacagactgagatgtacaccgtagaccaaaaa
ctaaaagatcttcgtgatgaaaaagatcatatggcagctgagtctgaggacagaattaag
ctctctcttaagaagtcagagttgcaaattttcgaaaagaatcataaaaagataatggat
gataataaggataagataaaaggagtgttgaagggaaggcttccatctgacaaggacttg
aagaacgaaattactcaggcacaaagggctcttcagagagaggttgatgacttgagtgtc
aaagcccgcgaagctgagaaagaggtcaatatgttgcagatgaaaatagaagaagttaat
cataacttgaccaaatatcacaaggacatggactcaagaaagagatttctggaatcaaag
ctccagttgatggaccaggaatttgctggtatagagtcctatcctaaaattatggactca
gtcaaagagaaaagggatgtccagaaaagcaagttcaacatcgccgatggtatgcgacaa
atgttcgatccatttgaaagagttgctcgtgctcatcatatttgcccttgctgtgagcgt
cctttctctgctgaagaggaagatgaatttgttaagaagcaacgtgtaaaagctgcaagc
tctgctgagcatattaaagtattggctatggagtcttcaaatgctgattctcgtttccaa
caaatagacaagcttcgtttggtttatgaagagtatgtcaaagttgggaaggagtcaata
cctcaagcagagaagaatttaaatgagctaaatgaagaattggaccaaaaaaatcaggct
cttgatgatgtgttaggtgtcttggctcagataaaggccgagaaggatgcagttgatgcg
ctaatacaacctgtagaaacatctgacagacttttccaagaaattcaagctcggcagaaa
caggttgatgatttggaatatggtcttgatatccgtgggcaaggagtaagatccatggag
gaaattcaatcagaattggatgacctgcagagcaaaaaagacaatttgtatacggaggtg
gagaagctgagaaatgaccagagatacatggaaaatgaatatgcaagtttccaactaaga
tgggctaatgtaagggaagagaagtcacgagtagcaaacagattggagcaaatcaaaagg
atagaagaggaattagatcgctttgtggaggagaaaaatcaaattgagcttgaagagaag
catcttgcagaggcttttggttccttgttgaaggaaaaggacaaatactttagggaccac
gaggatctgaaaacaaaacttggtgaacagttggaagagcaggcagaaattagaagaaat
tatcaacaggaagtagatacacttttgaagattacctccaaaataaaagagtattatgat
ttgaagaaagaacatagattgaatgaactgcaggacaagcgaagcctgtcagaagctcaa
cttcaaagttgcgagtccagaaaggatgagattttggctgaagtgaagaaaagtaaggat
ttaatggggaaccaggatagcttgagacgtaacattgaggataacttgaactatcggaaa
actaaggctgaagttgatgagctcacccaagggattgaattactggaagataaagtgctg
actttgggtggcttctccactgttgaagctgagcttaaaaagctttcacacgaaagagag
aggctactttctgagttaaacaagtgtcatggcaccttatctgtttatcaaagcaatatc
tccaagaacaaagtcgatcttaagcaggcgcaatacaaggatattgacaaacgctatttt
gatcagctaatccagcttaagactacggagatggcaaacaaggatctggacagatattac
agtgcccttgacaaagcactgatgcgtttccactcgatgaaaatggaagagataaataag
attatcagggaactgtggcaacaaacatacaggggtcaggacatagactacataagcatt
cattcagattctgaaggatctggcactcgatcttacagctataaggttttgatgcaaact
ggtgatactgaactagaaatgcgagggaggtgtagtgctggccaaaaggtccttgcatca
ctcatcatacgattggcattggctgaaactttttgtctcaactgcggaattcttgcactg
gatgaacctaccacaaacctagatggcccaaacagtgagagtcttgctgcagctctgtta
agaattatggaggacaggaaaggccaagaaaactttcaactaattgtcatcacacacgat
gagcgatttgctcaatatattggtcaacgccagcatgcagaaaagtattatcgcatcaca
aaagacgatcatcagcacagcataattgaagctcaggaaatatttgattga
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