Solanum dulcamara (climbing nightshade): 129881028
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Entry
129881028 CDS
T09577
Name
(RefSeq) elongator complex protein 1 isoform X1
KO
K11373
elongator complex protein 1
Organism
sdul
Solanum dulcamara (climbing nightshade)
Brite
KEGG Orthology (KO) [BR:
sdul00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03016 Transfer RNA biogenesis [BR:
sdul03016
]
129881028
Transfer RNA biogenesis [BR:
sdul03016
]
Eukaryotic type
tRNA modification factors
Elongator complex
129881028
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Beta-prop_ELP1_1st
Beta-prop_ELP1_2nd
A-sol_ELP1
TPR_ELP1
HB_ELP1
Beta-prop_WDR19_1st
TPR_GEMI5
tRNA_Me_trans_M
Motif
Other DBs
NCBI-GeneID:
129881028
NCBI-ProteinID:
XP_055811316
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All DBs
Position
2:81024808..81032203
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AA seq
1316 aa
AA seq
DB search
MKNLKILKGKFSKLQLQSEDEVISFAAFDVERNRLFLASSSNFIYTLSLPSSNQNAGAWN
SIADNLIDLEPGDFITSMDYLMEKEALIIGTSYGLLLLYNADDNTTEIVGRLEGGVKCIS
PSPDGDLLGVITGFGQILVMTPDWDVLYEMALDDLPEDSDVHEHTYSSNYLPESPISWRG
DGKYFATLSRVNNSQTLHKKLKIWERDSGVLHSVSESNPFMGSALDWMPSGAKIAAVYDR
KEDRKCPSIVFFERNGLERSSFCLNVEIDATVEFVKWNCNSDLLAAVVRGEKYDSLKIWF
LSNNHWYLKQEIRYTKDDRVRFMWDPIKPLQLVSWTTSGHITTYNFVWNTAVMNNSVALV
IDDSKILITPLSLSLIPPPMYLFCLNFPSAIQSMAFCSRSSINHLAASLSDSRLCVVELP
AIDCWEELEGKEFDVEAVSFDSGYKSFIHLAWMDSHKLLGVSHNLISNSAIKEPSTDELS
MYCLQEIELMCSEDRIPNSVTCSGWQAKGLNRLSLEGTVIGIAPDQGNGCSAYVQFDGGK
VFEYVLKLADARGLHQKRDDMSFSSSCPWMDLVQIGGCLPQKALLFGLDDSGRLLVGERI
LCNNCSSFSFYSNSADHTVTHLILATKQDLLFVVDISDILKGELEVKYGNFLAVFKHRKW
EDERNYIQIWERGARIVGVLHSDESAIILQTVRGNLECIYPRKLVLASIINALIQGRYKD
ALLMVRRQRIDFNVIIDHCGWQNFVLSAAEFVKQVNNLSYITEFVCSIKNENIMETLYKN
YISLSHDNEAKAVEHGDLESSHRNSKIHSVLLAIRKALEEHVTESPARELCILTTLARSD
PPALEQALERIKIIREKELSGSDELRRELYPSAEEALKHLLWLSDSEAVFEAALGLYDLN
LAAIVALNSQKDPKEFLPYLQELENMPIVLMRYNIDLKLQRFEAALQHIVSAGDAYFEDS
MILMKKNPQLFPSGLQLITDSVKRNQVLEAWGDHFSSTKCFEDAAATYLCCSCLDKALKA
YRECGNWGGVLTAAGLIKLGKEEVLQLAQELCEELQALGKPGDAAKIALEYCTDVSAGIN
FLVSAREWEEALRTAFLHRRDDLVLEVRTASLECASSLASEYEEGLEKVGKYLTRYLGVR
QRRLLLAAKLQSDERSINELDHDTASETSSNFSGMSAYTLGTRKGSAPSINSRASTKARD
MRRQRNRGKIRAGSPGEEMGLVEHLKGMSLTIGAKRELKSLLICLVMLQKEDIARKLQHV
ATNFQLSQMAAVKLADEAMLNDRINEHFYVLENYIPKIKEEMQHSELFSWQSKVLI
NT seq
3951 nt
NT seq
+upstream
nt +downstream
nt
atgaagaatttgaagatattgaaggggaaattctcgaagcttcagttacaatccgaagat
gaagttatcagttttgcagcatttgacgtcgaacgcaatcgtctcttcttagcttcctct
tcaaacttcatatacactttatctcttccatcatctaatcagaatgcaggagcttggaat
tccatagcagataaccttattgatttagagcctggggatttcattacttccatggattat
ttaatggaaaaagaagcattgattattgggacttcgtatggtcttctattgctatacaat
gcagatgataatacgacagaaattgttggccgattggagggtggagtaaagtgtatctca
cctagtccagatggagatcttcttggtgtaattactggttttggacagattctagtgatg
acacccgattgggatgttttatatgagatggctcttgatgatctgcctgaagattctgac
gtacatgaacatacttactcttccaattatttgccggagagcccaatttcatggcgaggt
gatggcaaatactttgcaacgctaagcagggtgaataattctcagaccttgcataaaaag
cttaaaatctgggaacgggactcaggggtactccattctgtttcagaatcaaatcctttc
atgggatcagcgttggattggatgcccagtggagccaaaattgctgcagtttatgaccga
aaggaagatagaaaatgcccatctatagttttctttgagaggaatggattagaaagaagc
tcattttgcctcaacgtagaaattgatgctactgtagaatttgtgaagtggaattgtaac
tcagaccttctagctgctgtggtcagaggtgaaaagtatgactctctgaagatctggttc
ttaagtaacaaccactggtacttgaaacaagaaatcagatacacgaaggatgacagagtc
agattcatgtgggatccgataaaacctctacagttggtttcttggactacaagtgggcat
atcacaacctataactttgtctggaatacagctgtcatgaataactcagtggcacttgta
attgatgactccaagatactaataactcctctttctttatctctcatcccaccacctatg
tacctcttttgtttgaattttccctctgccattcagagtatggcattttgctctagaagt
tctataaatcacctggctgcatccttgtcagatagcagattatgtgttgtagagcttcct
gcaattgattgttgggaggagctagaaggtaaagagtttgatgttgaggctgtctctttt
gattcaggatataagtctttcattcaccttgcatggatggattcacataagcttcttggt
gttagccataatctaattagcaactcagcaataaaagagccctctacagatgagctttct
atgtattgcctacaagaaattgagcttatgtgttctgaagatcgtattcctaattcagtg
acatgctctggttggcaagctaaaggtttgaatagattatctcttgaaggtactgtaatt
ggtatagctcctgaccagggaaacggctgctcagcatatgttcagtttgatggtgggaaa
gtgtttgagtatgtgttgaagttggccgatgccagagggcttcatcagaaacgtgatgat
atgagtttttcttcgtcttgcccctggatggatcttgtgcaaattggaggctgcttacca
cagaaagctttgctttttggtcttgatgacagtggtagattgcttgttggtgaaaggata
ttgtgcaacaattgcagcagtttttctttctactcgaattctgctgaccatactgtcacc
catttgattcttgcaactaagcaggatttgttgtttgtcgtcgatattagtgatatcctg
aaaggagaactggaggttaagtatgggaacttcctggcagttttcaagcacagaaaatgg
gaagatgaaagaaactatattcaaatatgggaaagaggtgccagaattgtaggtgttttg
cacagcgacgagtctgctatcatacttcaaacagttcgagggaatcttgagtgcatctac
cccagaaaattggtcctagcctcaataattaatgctttgatccaagggcgttacaaagat
gcattactcatggtaagaaggcaaagaattgatttcaatgttattattgaccattgtggt
tggcaaaactttgttctgtctgctgctgagtttgtcaagcaagtgaacaatttaagttat
ataactgaatttgtctgttcaataaagaatgaaaatatcatggagacgctgtacaaaaac
tatatatccctatctcatgacaatgaggctaaagctgtagaacatggagaccttgagagt
tctcataggaatagcaagatccactctgtcttgctggccataaggaaggctcttgaggag
catgtaacggaaagtcctgcaagagaactttgcattctgaccactttagctcgaagtgac
cctccagctcttgaacaagctttagagagaataaaaataatccgagaaaaggaattatcg
ggttcagatgaactgagaagggaactctacccttctgctgaggaagctttaaaacatctt
ttgtggttgtctgattcagaggcagtttttgaagctgcattaggtctttatgacttgaac
cttgcagctatcgtcgccttgaattcacaaaaggacccgaaagaatttcttccctatctg
caagaactagaaaacatgccaatagtgttaatgcgatacaatatagaccttaaattgcag
aggtttgaggctgcgcttcagcacattgtttctgcaggagatgcttactttgaggattct
atgattctcatgaagaaaaatccccaacttttcccctcgggactccaattgatcactgac
tctgtcaagagaaaccaggtacttgaggcctggggagatcattttagttccacaaaatgc
tttgaggatgctgctgcaacatatttgtgctgttcttgtttggataaagctttgaaggct
tatcgtgagtgtggtaattggggtggagttttgacagcagctggtctcattaaactaggg
aaggaggaagtcctgcaactagcgcaggagctttgcgaggaactccaagcacttggtaaa
ccaggggatgctgcaaaaatagctttggagtattgcacagatgttagtgctggtattaat
ttcttggtcagtgcaagggaatgggaagaagctttgaggactgcgtttcttcataggaga
gacgatctggtcctggaagtaaggactgcatcacttgagtgtgccagctcattggctagt
gaatatgaggaagggttggagaaagtggggaagtacttgactcgctatttaggtgttcga
caacggagattattacttgctgcaaagctacagtcggatgagcgatcaataaatgagctt
gatcatgatactgcttctgaaactagtagcaatttcagtggaatgagtgcatataccttg
gggacaagaaagggatcagctccatctatcaactccagagctagtacaaaagcgagagac
atgagacgtcaacggaatagagggaaaatacgtgctggaagtcccggtgaggagatgggt
ttggtagagcatttaaaggggatgtctctgactattggagctaagcgtgagctaaaatct
ctcttgatatgccttgtgatgctgcaaaaggaagatattgccaggaagttgcagcatgtt
gctacaaattttcaactgtcccaaatggcagctgtaaaattagctgacgaggccatgtta
aatgatagaattaatgagcatttctatgttctggagaattacattcccaaaataaaggaa
gaaatgcagcattcagagcttttctcctggcagtcaaaagttttgatttga
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integrated database retrieval system
