Solanum dulcamara (climbing nightshade): 129881228
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Entry
129881228 CDS
T09577
Name
(RefSeq) 5'-3' exoribonuclease 3-like isoform X1
KO
K12619
5'-3' exoribonuclease 2 [EC:3.1.13.-]
Organism
sdul
Solanum dulcamara (climbing nightshade)
Pathway
sdul03008
Ribosome biogenesis in eukaryotes
sdul03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
sdul00001
]
09120 Genetic Information Processing
09122 Translation
03008 Ribosome biogenesis in eukaryotes
129881228
09123 Folding, sorting and degradation
03018 RNA degradation
129881228
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
sdul03021
]
129881228
03019 Messenger RNA biogenesis [BR:
sdul03019
]
129881228
03009 Ribosome biogenesis [BR:
sdul03009
]
129881228
03016 Transfer RNA biogenesis [BR:
sdul03016
]
129881228
Transcription machinery [BR:
sdul03021
]
Eukaryotic type
RNA polymerase II system
Other transcription-related factors
Transcription termination factor
129881228
Messenger RNA biogenesis [BR:
sdul03019
]
Eukaryotic type
mRNA degradation factors
5'-3' decay
5' exonucleases
129881228
Ribosome biogenesis [BR:
sdul03009
]
Eukaryotic type
Pre-60S particles
RNases
129881228
Transfer RNA biogenesis [BR:
sdul03016
]
Eukaryotic type
tRNA degradation factors
Rapid tRNA decay (RTD) pathway factors
129881228
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
XRN_M
XRN_N
zf-CCHC
Motif
Other DBs
NCBI-GeneID:
129881228
NCBI-ProteinID:
XP_055811558
LinkDB
All DBs
Position
1:84633636..84663037
Genome browser
AA seq
1119 aa
AA seq
DB search
MGVPAFYRWLAEKYSMVIVDVIEEEAAVIEGIKVPVDTSKPNPNNIEYDNLYLDMNGIVH
PCFHPEDRPSPTTFDEVFHCMFDYIDGLFSMVRPRKLLYMAIDGVAPRAKMNQQRSRRFR
AAKDAADAAAEEEKLREEFEREGRKLPPKQASQVFDSNVITPGTQFMATLSIALQYYIHL
RLNHDPGWKKIKVILSDANVPGEGEHKIMSYIRLQRNLSGYDPNMRHCLYGLDADLIMLG
LATHEVHFSILREVVFTPGQQDKCFLCGQMGHLAANCEGKAKRKAGVVDEKGDAEVVTKK
PFQFLNIWTLREYLEYDLRIPNPPFEIDLERIVDDFIFICFFVGNDFLPHMPTLEIREGA
INLLMAVYKKEFRSLGGYLTDASQPNLGRVESFIQAVGLYEDKIFQKRSHLHQKQSERIK
REKAQAKRGDDFAPQAEPESLVPVARFHGSRLASGPSPSPYQQGGASKSCRPDQLGQTTS
SLSILDIKTEQSDTSDDKKTARARKNKKKRDVVRAKKIARLSSVATIGAAIVEAENDLEI
EVSENKEELKTKLNKLLRDKNDSFNSENPEEDKVKLGEPGWRERYYDEKFSAKTPEEMEA
VRKEVVLKYTEGLCWVMHYYYEGVCSWQWYYPYHYAPFASDLKDLGKMNITFELGSPFKP
FNQLLGVFPAASAHALPEQYRKLMIDPESLILDFYPTDFEVDMNGKRFSWQGIAKLPFIE
EERLLTEVAKIEHSLTEEESRRNSVMFDMLFVSLSNPLSPFIFSLDDRCKQLTDKERLEI
KEHLDPIVRFTCSGGMNGYLSLCSGDPCPPIFRSPIEGMENITQNQVICAIYRLPDTHKH
IARPVEGVIFPTKMVTLGDMKPDPVLWHEESRKKPWENGRNHHRGAMSDRNHHHDAMSGR
NQHRGAMSGRQLGEAAHRLVVNSLQKKKDKGGHGDYRRTHNGQGRGNYMHAQPASYRAAY
GPPVPSFQTQRNNVHDNVRPSFGHSARDAGRHPRSSGSDDHSCKSYPYHETHSRDYRGHG
HHPDGMQQNGGHSHSSYASHPQQVGQIPVPPTSNFHQQSGYNTSTSYVPYGAESYNQWGG
GRASQNQNVRGNHHPRPSGNQFSAFGRGGNRRPPSGHRR
NT seq
3360 nt
NT seq
+upstream
nt +downstream
nt
atgggagttccagcattttatcgatggttagctgagaagtattcaatggttatagttgat
gtgatagaagaagaagcagctgttattgaaggaattaaagttccagttgatacgagtaaa
cctaatcctaacaatattgaatatgataacttgtatttggatatgaatggtattgttcat
ccatgttttcaccctgaagatcgaccttctccaaccacatttgatgaggtgttccattgc
atgtttgactacatagacgggcttttctcaatggtgcgtcctcgaaagctgctatatatg
gctattgatggtgttgcacctagggcaaaaatgaaccagcaaagatctagacgttttaga
gcagccaaagatgcagcagatgcggcagcggaggaggaaaagttgcgcgaggaatttgag
agggagggtaggaagcttcctcctaaacaggcttcccaagtttttgattcaaatgttatc
actcctggaacccaattcatggctacgttgtcgatcgctcttcaatactatattcatctt
agactaaaccatgatcctggatggaaaaaaattaaggttatactttctgatgcaaatgtc
cctggtgaaggtgagcataaaattatgtcctatatccgcctacaaaggaatctttctggg
tatgatccaaatatgcgtcactgtctttatggtttggatgcagatctaattatgttgggt
ttggctacgcatgaagttcacttctccatacttagagaggtcgtttttactccaggccag
caggacaaatgtttcctttgtggtcaaatgggtcatttagctgcaaattgcgaaggaaag
gcaaagcgaaaagcaggggtagttgatgagaaaggagatgctgaggttgtgacaaagaaa
ccgttccagttcctcaacatctggactctgcgggagtatctggaatatgatttgagaatt
cccaatcctccctttgagattgatttggagcgtattgttgatgacttcatatttatatgc
ttcttcgttggcaatgattttctaccacatatgcccacacttgagattcgtgagggcgcg
ataaacttgttgatggctgtttataagaaggagtttaggtctttgggagggtatctgact
gatgcaagccagccaaaccttggcagggtagaatcttttattcaggcggtaggattatat
gaagataagatattccaaaagagatctcacttgcatcagaaacaatctgaaagaatcaag
cgtgaaaaggcacaggcaaaaagaggagatgactttgcacctcaagctgaacctgaatct
ctggttccagttgctcgattccatggttctcgtctcgcttcaggtccttcaccttccccc
tatcaacagggaggagcttcaaaatcttgtagacctgatcagcttgggcagaccacctct
agtctttctatccttgacattaagaccgaacagtctgacacttctgatgataaaaagact
gcccgtgcccgaaaaaacaaaaagaaaagggatgttgtccgtgccaaaaaaatagcacgt
ttgagttccgtggccacgataggagctgcaattgttgaagctgagaatgaccttgaaatt
gaagtttctgaaaacaaggaagaattgaagacaaaactaaacaagctgcttcgagacaag
aatgatagtttcaattcagagaatcccgaagaagacaaggtcaaactgggcgagccagga
tggagagagaggtattatgatgaaaaattttctgcaaaaacaccagaggaaatggaagca
gtacgaaaagaagttgtgctaaaatatacagaagggctatgctgggttatgcattattat
tatgaaggggtttgttcctggcaatggtattatccctatcattatgcaccatttgcttct
gatcttaaggatcttgggaagatgaacatcacatttgaactaggttctcctttcaagcca
ttcaatcagctgttgggggttttccctgctgccagtgctcatgctctacctgagcagtat
aggaaattgatgatagatccagagtcactcattcttgatttttatcctactgattttgag
gtggacatgaatggcaagcgcttttcttggcagggtattgccaaattgcctttcattgaa
gaagaaaggctcctaacagaggttgcaaaaattgaacattctttgacggaagaagaatca
cgaagaaacagtgtgatgtttgatatgctttttgtttcattatccaatcctttgtctcca
ttcattttttctcttgatgatcgctgtaagcagctcacagacaaagaacgccttgaaatc
aaggagcacttggacccaatagttaggtttacatgcagtggtgggatgaacggctaccta
tccctttgcagcggagatccttgtcctccgatttttagatcacccattgaagggatggaa
aatattactcaaaatcaagtcatatgtgcaatatacagacttccagatactcataaacat
atcgctcggccagtggaaggggttattttcccgacaaagatggtcacattaggtgatatg
aaacctgatcctgtactatggcatgaggaatctaggaagaaaccttgggaaaatggacgg
aaccaccaccgtggtgcaatgtctgataggaaccaccaccatgatgcaatgtctggtagg
aaccagcaccgtggtgcaatgtctggtcgtcagcttggagaagctgcacatagattggtg
gttaatagtttgcagaagaaaaaagataagggtggacatggtgattacaggcgtacacat
aatggccaaggacgtggtaattatatgcatgcccaaccagcttcctatcgtgctgcatat
ggtcctcccgttccttcctttcaaacgcagagaaacaatgttcatgataatgtacggcct
agttttggccattctgctcgagatgctggacgccaccccagatcttcaggttccgatgac
catagttgtaagtcttacccatatcatgagacccatagtagagattatcgcggtcatgga
catcatccagatggaatgcagcaaaatggtggacacagtcattcctcgtatgccagtcat
cctcagcaggtgggtcaaataccagttccaccaacttctaatttccaccagcagagtgga
tataacacttctacgagctatgtaccttacggggctgaaagctataaccaatggggtggt
ggaagggcttctcaaaaccaaaatgtcagaggaaatcatcatccacgtccttcaggaaat
cagttctcagcttttggtaggggaggaaatagaaggccaccttcagggcatcgtcggtag
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integrated database retrieval system
