Solanum dulcamara (climbing nightshade): 129882020
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Entry
129882020 CDS
T09577
Name
(RefSeq) cell division cycle protein 48 homolog
KO
K13525
transitional endoplasmic reticulum ATPase
Organism
sdul
Solanum dulcamara (climbing nightshade)
Pathway
sdul04141
Protein processing in endoplasmic reticulum
Brite
KEGG Orthology (KO) [BR:
sdul00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
04141 Protein processing in endoplasmic reticulum
129882020
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
sdul03019
]
129882020
03009 Ribosome biogenesis [BR:
sdul03009
]
129882020
04131 Membrane trafficking [BR:
sdul04131
]
129882020
09183 Protein families: signaling and cellular processes
04147 Exosome [BR:
sdul04147
]
129882020
Messenger RNA biogenesis [BR:
sdul03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
Ran-mediated transport factors
129882020
Ribosome biogenesis [BR:
sdul03009
]
Eukaryotic type
Pre-60S particles
Ribosome quality control proteins
129882020
Membrane trafficking [BR:
sdul04131
]
SNARE
SNARE associated proteins
Others
129882020
Autophagy
Aggrephagy
Other aggrephagy associated proteins
129882020
Exosome [BR:
sdul04147
]
Exosomal proteins
Exosomal proteins of haemopoietic cells (B-cell, T-cell, DC-cell, reticulocyte, and mast cell)
129882020
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
AAA
AAA_lid_3
CDC48_N
RuvB_N
AAA_16
CDC48_2
AAA_2
AAA_5
AAA_22
AAA_33
AAA_14
TIP49
NPHP3_N
RNA_helicase
nSTAND3
Mg_chelatase
AAA_17
AAA_28
Parvo_NS1
AAA_18
ATPase_2
IstB_IS21
ABC_tran
AAA_7
Viral_helicase1
NB-ARC
AAA_24
TsaE
Zeta_toxin
AAA_lid_PRS2_C
DUF815
NACHT
Vps4_C
Zot
Phage_Mu_Gp48
Motif
Other DBs
NCBI-GeneID:
129882020
NCBI-ProteinID:
XP_055812107
LinkDB
All DBs
Position
3:247817..252981
Genome browser
AA seq
807 aa
AA seq
DB search
MSNKDESSDLKGAKRDYSTAILERKKSPNRLVVDEAINDDNSVVSLHPDTMEKLQLFRGD
TILIKGKKRKDTICIALADDTCDEPKIRMNKVVRNNLRVRLGDVVSVHQCPDVKYGKRVH
ILPIDDTIEGVTGNLFDAYLKPYFLEAYRPVRKGDLFLVRGGMRSVEFKVIETDPPEYCV
VAPDTEIFCEGEPLNREDENRLDEVGYDDVGGVRKQMAQIRELVELPLRHPQLFKSIGVK
PPKGILLYGPPGSGKTLIARAVANETGAFFFCINGPEIMSKLAGESESNLRKAFEEAEKN
APSIIFIDEIDSIAPKREKTHGEVERRIVSQLLTLMDGLKSRAHVIVMGATNRPNSIDPA
LRRFGRFDREIDIGVPDEVGRLEVLRIHTKNMKLAEDVDLERIGKETHGYVGADLAALCT
EAALQCIREKMDVIDLEDESIDAEILNSMAVTNEHFSTALGTSNPSALRETVVEVPNVSW
EDIGGLENVKRELQETVQYPVEHPEKFEKFGMSPSKGVLFYGPPGCGKTLLAKAIANECQ
ANFISIKGPELLTMWFGESEANVREIFDKARGSAPCVLFFDELDSIATQRGGSSGDAGGA
ADRVLNQLLTEMDGMNAKKTVFIIGATNRPDIIDPALLRPGRLDQLIYIPLPDEDSRHQI
FKACLRKSPLSKDIDLRALAKYTQGFSGADITEICQRACKYAIRENIEKDIEKERRRRDN
PEAMEEDVDDEVSEIKPAHFEESMKYARRSVSDADIRKYQAFSQTLQQSRGFGSEFRFAE
ASIGATTGTADPFATSAGGADEDDLYS
NT seq
2424 nt
NT seq
+upstream
nt +downstream
nt
atgagtaacaaagatgaatcatccgatttgaagggggctaagagggattatagtacagca
attttggagaggaagaaatcacctaatcgtcttgttgttgatgaagcaatcaatgatgat
aattctgttgtttctcttcaccctgatactatggaaaagctccagcttttccgtggtgac
acaatcttgataaagggaaagaaaagaaaagatacaatatgcattgcccttgctgatgac
acatgtgatgagccaaagattaggatgaacaaggttgtcagaaataaccttagggtccgt
cttggtgatgtcgtctctgtgcatcaatgtcctgatgtcaaatatggtaaacgtgtgcac
attcttcccattgatgacaccattgaaggggttaccggaaatctatttgatgcttacttg
aaaccctatttccttgaagcatatcgaccagtgagaaagggtgatctttttcttgtaaga
ggagggatgagaagtgtagaattcaaggttattgagactgaccctcctgaatactgtgtt
gttgccccagatactgagatattctgtgagggtgaacctttgaacagagaagatgagaat
cggctagatgaggttggttatgatgatgttggtggcgtgcgtaaacaaatggctcagatc
cgcgagcttgttgagcttccattgaggcatccacaactgttcaaatctattggtgtgaaa
cctcccaaaggaattctcttgtatggacctcctggatcagggaagacattgatagctcga
gcagttgctaatgagaccggtgcgttcttcttttgtattaatgggccagagataatgtcc
aaattggcgggagaaagtgaaagcaatctcaggaaagcatttgaggaagctgagaagaat
gcaccttcaattatctttattgatgaaattgattcaatagctcctaaacgtgagaagaca
catggagaggtcgagaggaggattgtttctcagctgttgactctcatggacggtctcaaa
tcacgtgcccacgtaattgtcatgggtgccactaatcgccctaatagtattgaccccgcc
ctaagaaggtttggcagatttgatagggagatagatattggtgtcccggatgaagtcggg
cgccttgaggtgcttcgtatccatacaaagaacatgaagctcgccgaagatgttgatttg
gaaagaattggcaaagaaacacatggttatgttggtgcggatttggcagctttgtgtact
gaagctgcacttcagtgcatcagagagaagatggatgtgattgatttggaagatgaatcg
atcgatgcagagatattgaactccatggctgtgactaatgagcacttctcaactgccctt
gggacaagcaatccatctgccctgcgtgaaactgttgttgaagtccctaatgtctcctgg
gaggacatcggaggccttgagaatgtcaagcgtgagcttcaagagactgttcaatatccg
gtggaacatcccgagaagtttgagaagtttggtatgtctccttcaaagggtgttctcttc
tatgggccacctggatgtgggaaaactttgttggcgaaggctattgcaaatgaatgccag
gccaattttattagtatcaagggtccagaattgcttaccatgtggtttggagagagcgaa
gccaatgttcgagaaatatttgacaaggctcgagggtctgctccttgtgtcctgtttttc
gatgagttggactcgattgctactcagagaggcggtagcagtggagatgccggaggagct
gctgatagagttttgaatcaacttctcactgaaatggatggtatgaacgccaagaagacg
gttttcatcatcggtgccaccaacaggcctgacattattgatcctgcacttctacgtccc
ggtcgtcttgaccaattgatttacattcctctccctgacgaggactcccgccatcaaatt
ttcaaggcatgcttgcggaaatcacccctttctaaggatatagatctaagagctctagca
aaatatacgcaagggttcagcggagctgacattacggagatttgccaacgtgcatgcaaa
tacgctatccgagagaacattgagaaagatattgagaaggagagaaggagaagggataat
ccggaagccatggaggaagacgttgacgatgaggtatctgagatcaagcctgctcacttt
gaggaatcaatgaagtacgctcggaggagtgttagtgatgctgatatccgcaagtaccag
gcgttttctcagacattgcagcagtcccgagggtttggttctgagttccgttttgcagag
gccagcattggtgccaccactggaactgctgatccctttgcaacttctgctggtggtgct
gatgaagatgacctgtatagctag
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