Solanum dulcamara (climbing nightshade): 129882022
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Entry
129882022 CDS
T09577
Name
(RefSeq) pre-mRNA-splicing factor ATP-dependent RNA helicase DEAH10
KO
K12818
ATP-dependent RNA helicase DHX8/PRP22 [EC:
5.6.2.6
]
Organism
sdul
Solanum dulcamara (climbing nightshade)
Pathway
sdul03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
sdul00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
129882022
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
sdul03041
]
129882022
Enzymes [BR:
sdul01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
129882022
Spliceosome [BR:
sdul03041
]
Complex C
Other components
Step II factors
129882022
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
OB_NTP_bind
HA2_C
Helicase_C
HA2_N
DEAD
AAA_22
AAA_19
nSTAND3
Exonuc_VIII
GAP1-M
T2SSE
NACHT
ABC_tran
Motif
Other DBs
NCBI-GeneID:
129882022
NCBI-ProteinID:
XP_055812110
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All DBs
Position
3:316995..326992
Genome browser
AA seq
711 aa
AA seq
DB search
MPSMAGNNFSRNTHQHQTKGDFFSRKQKIEQQRKNLPIAEVERRLVEEVRNNDTLIIVGE
TGSGKTTQLPQYLFKWGFCRDGGIIGITQPRRVAAITVAKRVAEECGVPLGEKVGYAIRF
EDVTSGQTKIKYMTDGLLLREALLDPYLSKYSVIIVDEAHERTIHTDVLLGLLKNVQKAR
SKSINGVENTDHNNSNNGHALGEVIDNQNDASLKPCQAKKYNPLKLIIMSASLDARVFSE
YFGGAKAVHVQGRQFPVDIFYTHKPETDCIDAALITIFQIHLEEGPGDVLVFLTGQEEIE
SVERLIHERLRQLPECSRKLLTFPIFSSLPSEKQMRVFMPSPAGHRKVILATNIAETSVT
IPGIRYVVDPGLVKARTYDPKMGVDSLIIVTTSKAQALQRSGRAGRDGPGKCYRLYQESF
FEKLTDSTLPEIKRCDLSNVVLQLKALGIDDVINFDFIEKPDRTAVVNSLWSLYLLGAVT
EDNKLSDVGRQMARLPLDPVYSKALIVASQFGCLKEMLICVAMLSVESIFYAPREKLEES
RNALKSFASPEGDHLTLLNVYRTADEFFQKNKMVNSEEKAEKNLRKWCKDNYINSRSLKH
ARDIHSQIVRNVEQMGLRVTSCEDDMLLLRRSLAASFFLKVAMKQPDGAYRVTLSGLIVQ
IHPSSVLFRAKPECIVFNELVHTNHSYVRNVSRIDYLWLFELAPHLYAVQD
NT seq
2136 nt
NT seq
+upstream
nt +downstream
nt
atgccttcaatggcaggtaacaatttttcaagaaacactcatcaacatcaaacaaaaggg
gacttcttttccaggaagcaaaagattgagcaacagagaaaaaatttaccaattgctgaa
gttgaaaggagactcgtggaggaggtgcggaacaatgacactctgataattgttggagaa
actggaagtggaaagacaactcaactacctcagtatctttttaaatggggattttgccgt
gatggtggtatcattgggataactcaacctagacgtgtggctgctatcactgttgctaaa
cgcgttgctgaggaatgtggcgttccattgggtgaaaaggttggatacgctattagattt
gaagatgtaacttctggccaaacaaagatcaaatatatgacagatggtttacttctgagg
gaagcattattggatccatatctctccaagtattctgttattattgttgatgaagcgcac
gagcgaactatccacactgatgtattgcttggattgttaaagaatgtacagaaagcaagg
tcaaaatctattaatggagtggaaaatactgatcataataattctaacaacgggcatgcc
ttgggggaagtgattgacaatcagaacgatgctagtttgaagccttgtcaagcgaagaag
tacaacccattgaaattgatcatcatgtcagccagtttggatgcacgagttttctcagag
tactttggtggtgcaaaagctgttcatgttcagggacggcagtttcctgttgatatattc
tacacccataagcctgagacagattgcatagatgcagctttgattactatatttcagata
catctagaggagggtcctggtgatgtacttgtattccttactggtcaagaggagattgaa
tccgttgagaggcttatccatgaacgcctccgacaattacctgaatgcagtaggaagctc
ttaacttttcccatattttcatcacttccctctgagaagcaaatgagggttttcatgcct
tcaccagctggacatcgtaaggtgatactggcaacaaatattgctgagacatcggtgaca
atacctggaattaggtacgttgttgatcctggactggtgaaagcccgaacatatgatcct
aagatgggagttgattcattgatcattgtcacaacatctaaagctcaagctctgcaaagg
agtggacgtgcaggacgtgatgggcctgggaaatgctatcgtttgtatcaagaaagtttc
tttgagaaacttacagattctacgttacccgagattaagagatgtgacctctcgaatgtt
gtattgcagctcaaggctctaggcattgatgatgtcatcaactttgacttcattgaaaaa
ccagacaggactgccgtagtcaactcattgtggtctctctacttgttgggtgctgtaaca
gaagataataaactctcagatgttggacgtcaaatggccaggctaccccttgatccagtc
tattccaaggctctcattgttgctagccaatttggatgcttgaaagaaatgttgatctgt
gttgcaatgctttcagtggaatctattttctatgcaccacgtgaaaagttggaagagtca
cgaaatgcattgaaaagctttgcaagtccagagggggatcatctgacattgcttaatgta
taccgcactgctgatgagttctttcagaagaataagatggtaaatagtgaagaaaaagct
gaaaagaatcttcgaaaatggtgcaaggataactatatcaacagtcgctctctaaaacat
gctcgtgatatccacagtcaaattgtgaggaatgttgaacaaatgggtcttcgcgtcact
tcttgtgaagatgatatgcttctcctccgcagatcccttgctgcctcgttttttcttaaa
gtagctatgaagcagcctgatggtgcatacagggtcacgttaagtggtttgattgtccaa
atacacccgtcttctgtcctgttccgagccaagccagagtgtatagttttcaatgaacta
gttcatactaaccatagttatgtccgtaatgtttccagaatcgattacttgtggctcttt
gagctggctccccacttgtatgccgtgcaagactaa
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