Solanum dulcamara (climbing nightshade): 129882100
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Entry
129882100 CDS
T09577
Name
(RefSeq) polyadenylation and cleavage factor homolog 4
KO
K14400
pre-mRNA cleavage complex 2 protein Pcf11
Organism
sdul
Solanum dulcamara (climbing nightshade)
Pathway
sdul03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
sdul00001
]
09120 Genetic Information Processing
09122 Translation
03015 mRNA surveillance pathway
129882100
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
sdul03021
]
129882100
03019 Messenger RNA biogenesis [BR:
sdul03019
]
129882100
Transcription machinery [BR:
sdul03021
]
Eukaryotic type
RNA polymerase II system
Other transcription-related factors
Transcription termination factor
129882100
Messenger RNA biogenesis [BR:
sdul03019
]
Eukaryotic type
mRNA processing factors
3' end processing
Pre-mRNA cleavage factor IIm (CFIIm)
129882100
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
zf_PCFS4
CID
Pcf11_C
Motif
Other DBs
NCBI-GeneID:
129882100
NCBI-ProteinID:
XP_055812225
LinkDB
All DBs
Position
3:1534618..1543279
Genome browser
AA seq
1036 aa
AA seq
DB search
MEMEGSRRPFDRSRLEPGPKKPRLIETPIGTERGSNGRSFIPQRAAGNSRIRASDKGGEL
ESSDSIRGPYQQQQQNQELVSQYKTALAELTFNSKPIITNLTIIAGENLQAAKAIAATIC
NNIIEVPTEQKLPSLYLLDSIVKNIGRDYIKYFATRLPEVFCKAYRQVEPSVHPGMRHLF
GTWKGVFPPQQLLLIEKELGFATGVNGSSSGTSRPDPQAQRPAHSIHVNPKYLEARQRLQ
QSTRAKGAVSDISSTLNVNEDTERPERTTSVSSGRSWIDPSIKCAQKEKLNEHVPEKTIS
AAYGDSDYVSDLSRRSAFAVGRGGERFKEQGFDKPWYDSGNGKILSQRSGLDIKHGFQSI
AQKSATSDAHPQLIPSLPNRTSLMDRSWKNSEEEEYMWDDVNSAAKDRWASEDSDKSDLE
NQLRRSQSIKEVGLRADSEASADSLSAEERGPATFGNQMSAMWSRESHSLDGARHSASVQ
GAPVHPEGYQTSFSGLSKAANSVGRASYKLQTGSVHVGTPNFGPMNATLESRVQQGETLR
AASPSAQSPMHQRPPSPSLITSNTNQLINSLGEQYQMQTSSRSDPRLSQISRRSNLDPRN
QYAQESLAMQSRNTVSVNSQRQQSPSLQNSSALASSHQLRHNAQRESLESEYSGQPKNST
VPQISGFPDPSSTSSLLAAVLKSGVIGSKSSSGTTPSSLDKGALSSQASAQPPPGQFSPS
GPRIPQTSVSSLSMDRNASNPPNYSQRNVEQPPLPPGLPPTPVGSASMQPPNAPNTASSP
LSSILSTLVAKGLISASKKEPPIYTPSDTLPQTQNLIPPANSISTPALSAPISSCVPSSA
PKDDLSLSKPSAKTADALLQSAKEEAKSLIGLAFKPDVIRKSHPAVISELLDDVPHHCGI
CGFGLKLQEKLDRHLEWHSSRNPDPKLLKNSRKWYLNSGEWIAAFGGLPCGDKSKGPAGG
SRETSECTETMVPADECQCVCVLCGEFFEDFYNEESDEWMFKDAVYMSIPSESDCQGPIV
HKTCISESSCQELGLA
NT seq
3111 nt
NT seq
+upstream
nt +downstream
nt
atggaaatggagggttctcgtagaccgtttgatagatcaagattagagccaggacctaag
aaaccaagattaatcgaaaccccaattggaactgaacgaggttctaatgggcgaagcttt
attcctcaaagggcagctgggaattcgaggattcgagctagtgataaagggggagagttg
gaaagcagtgattcaattcgcgggccttatcaacaacagcagcagaatcaggagctagtg
agtcagtataagacagctttagctgaactgacatttaattcgaagccgataatcacaaac
ttgactataattgctggtgagaatttgcaagctgctaaggcgattgctgctactatctgc
aacaacattattgaggttcctactgagcaaaagctgccatctctatatcttttggacagt
attgtgaagaacatcggccgggattatattaagtattttgccaccaggctacctgaggtt
ttctgcaaagcttatagacaggttgaaccttcagtacatcctgggatgcggcatcttttt
ggaacttggaaaggagtattcccccctcaacaactgctattaattgagaaggagctcgga
tttgctactggtgtcaatggctcatcatcaggaacatctaggcctgatccacaggctcaa
cgacctgcacatagcattcatgtaaatccgaaatatctggaggcacggcaacgcctacag
caatcaaccagggcaaaaggagcagttagtgacatcagcagcactcttaatgtaaatgag
gacacagagagaccagagagaacgaccagtgttagttctggaagatcatggattgatccc
tccattaagtgtgctcagaaagaaaagttgaatgagcatgttcctgagaaaactatcagt
gccgcatatggagattcggattatgtttctgatctgtcgagacgttctgcctttgcagta
ggaagaggaggtgaaagatttaaagaacaggggttcgataaaccttggtatgattccggg
aatggtaaaatattgagccaaagaagtggcttggacattaagcacggtttccaaagtata
gcccaaaaatctgcaacctctgatgcacatccacaactgataccgtccttgccaaataga
accagtttaatggataggagctggaagaattctgaggaagaggagtacatgtgggatgat
gtaaatagtgcagctaaagaccggtgggcatctgaggattcagataaatctgacttagaa
aatcaactacggagatcacaaagcataaaggaggttgggttaagggctgatagtgaagcc
tcagctgattctctttctgccgaagagagagggccagctacttttgggaatcaaatgtca
gcaatgtggtccagggaatcacattctttagatggagctaggcattcagcttctgttcaa
ggtgctccagttcatccagaaggctatcaaacttctttcagcgggttgtcaaaagctgca
aattcagtaggtagggcatcttacaagttacagacaggctcagtccatgttggaacgcca
aattttgggccgatgaatgcaactctggaatccagggtgcaacagggagagactctcaga
gctgcctctccctctgctcagtcaccaatgcatcagcgtcctccatccccatcacttata
acaagcaacactaatcaattaattaacagtctcggtgagcagtaccagatgcagaccagt
tctcgttctgatccaagactatcccaaatctcaaggaggtcaaatctagatccccgtaac
cagtatgctcaggaatctctggcaatgcaatctcggaataccgtttcagttaattcacaa
agacaacagtctccaagtttgcagaattcgtctgccttggcttcttctcatcagttgaga
cataatgctcagcgggaaagcctggaatctgaatattctggtcaacccaagaattcaaca
gttcctcagatttcaggttttcctgatccctctagcactagcagtttgttggctgctgtt
ttgaaaagtggagtcattggtagtaaatcaagttctggtactacaccgagttctcttgat
aagggtgctctgtcatcccaagccagtgcacagcctcctcccggccagttttccccatct
gggcccaggatcccacagacctctgtctctagtctatcgatggacaggaatgcttcaaac
cctccaaattattcccagagaaatgtagaacagccaccattgccacctggtctacctcca
actcctgtagggagtgcatcaatgcagcctccgaatgcaccaaataccgcttccagccct
ctatcaagtattttgagtacattggtggcgaaggggttaatatctgcatcaaagaaggaa
ccacctatttatactccttcagatacacttcctcaaactcagaaccttattccacctgca
aactccatttcaactcctgctttatctgctccaatatcctcatgtgttccttcctcagct
cccaaggatgatctttctctctcaaaaccttctgctaaaactgctgatgccttacttcag
tccgcgaaagaagaggcaaaaagtctcattgggcttgcatttaagccagatgtgattcgg
aagtcccatcctgctgtgatcagtgaacttcttgatgacgttccacatcattgtggcata
tgcggttttggacttaaactccaagagaaacttgatagacacttggagtggcactcatcg
agaaatccagatcccaaactgttgaaaaattcaagaaagtggtatttaaattctggggaa
tggattgctgcatttggtggcctcccttgtggtgataaatccaaagggccagctggaggt
tctagagaaacatcagaatgtactgagaccatggttcctgcagatgaatgtcaatgtgtg
tgtgttttgtgtggtgagttttttgaagacttttacaatgaagaaagtgacgaatggatg
ttcaaagatgctgtttacatgagtattccaagtgaaagtgattgtcagggcccgatagtc
cacaagacgtgtatttcagaaagttcttgtcaagaattggggcttgcctag
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integrated database retrieval system
