KEGG   Solanum dulcamara (climbing nightshade): 129882132
Entry
129882132         CDS       T09577                                 
Name
(RefSeq) sm-like protein LSM7
  KO
K12626  U6 snRNA-associated Sm-like protein LSm7
Organism
sdul  Solanum dulcamara (climbing nightshade)
Pathway
sdul03018  RNA degradation
sdul03040  Spliceosome
Brite
KEGG Orthology (KO) [BR:sdul00001]
 09120 Genetic Information Processing
  09121 Transcription
   03040 Spliceosome
    129882132
  09123 Folding, sorting and degradation
   03018 RNA degradation
    129882132
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:sdul03019]
    129882132
   03041 Spliceosome [BR:sdul03041]
    129882132
Messenger RNA biogenesis [BR:sdul03019]
 Eukaryotic type
  mRNA surveillance and transport factors
   mRNA cycle factors
    P-body specific factors
     129882132
  mRNA degradation factors
   5'-3' decay
    Lsm complex
     129882132
Spliceosome [BR:sdul03041]
 Complex B
  U4/U6.U5 tri-snRNP components
   LSm proteins
    129882132
SSDB
Motif
Pfam: LSM DUF150_C Hfq
Other DBs
NCBI-GeneID: 129882132
NCBI-ProteinID: XP_055812268
LinkDB
Position
3:2468000..2471787
AA seq 99 aa
MSGRKETVLDLAKFVDKGVQVKLTGGRQVVGTLKGYDQLLNLVLDEAVEHLRDADDPLKT
TDQKRSLGLIVCRGTAVMLVAPTDGTDEISNPFVQPDGA
NT seq 300 nt   +upstreamnt  +downstreamnt
atgtctggcagaaaagaaacagttctagatttggcaaaatttgttgacaagggtgtgcaa
gtcaagcttactggtgggaggcaagtggtaggaacacttaaaggctatgaccagctgctt
aatcttgtcttggatgaagctgtggaacacctaagagatgctgatgatcccctgaagact
accgatcagaaacgaagtcttggcttaatagtctgcaggggtactgcagtaatgcttgtg
gctccaacagatggtacagatgagatatccaatccttttgtccagccagacggggcatag

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