Solanum dulcamara (climbing nightshade): 129882182
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Entry
129882182 CDS
T09577
Name
(RefSeq) mRNA-decapping enzyme-like protein isoform X1
KO
K12611
mRNA-decapping enzyme 1B [EC:3.-.-.-]
Organism
sdul
Solanum dulcamara (climbing nightshade)
Pathway
sdul03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
sdul00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
129882182
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
sdul03019
]
129882182
Messenger RNA biogenesis [BR:
sdul03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
P-body specific factors
129882182
mRNA degradation factors
5'-3' decay
Decapping complex
129882182
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DCP1
Motif
Other DBs
NCBI-GeneID:
129882182
NCBI-ProteinID:
XP_055812338
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Position
3:complement(3290751..3316938)
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AA seq
365 aa
AA seq
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MSSTSKLMPNLDERSTKMLNLTVLQRIDPCIEEILITSAHVTLYEFNVDLNQWSRKEVEG
SFFVVKRSAQPRFQFIVMNRRNAAENMVEDLLGDFEFEVQVPYLLYRNAAQEVNGIWFYN
AHEIEEVADLFGRILGAYSKVALKPQLRKSEFTEHEMVPTSTTIEGPFGPALTTSSDGFG
ADDSSFMNFFNTAATIGHTSSNVENSGLPYHYRAQAVDPSTRVLSPLPSPAPILQVSLPV
QSAPSLPPQSRRDSANLINSANYPANLVKPSFFTPPASPVLVTTSVSSATLTPALYAHVN
PQHPHGTPLVQPFPPPTSPPFLTSTQIPPQSGTLSREKVQDVLLMLVQDNQFIDLVYQAL
LKVHS
NT seq
1098 nt
NT seq
+upstream
nt +downstream
nt
atgtcgtcgacgtcaaagttgatgccgaatctggacgagcgaagtacgaagatgctaaac
ctcactgtgctacagagaatcgatccgtgtattgaggagatcctgatcacctctgctcat
gttacgttgtacgagttcaacgtcgacctcaatcaatggagccgcaaggaggttgaaggt
tctttctttgtagttaagcggagtgctcagccaaggttccagttcattgttatgaaccgc
aggaatgcagcagaaaatatggtggaagatctcttgggggactttgagttcgaggttcag
gttccatacttgttgtatcgcaatgcagcccaagaagtcaatggtatttggttttataat
gcacatgaaattgaggaggttgcagatctctttggcagaattttaggtgcatactcaaag
gttgccctgaagccacagttaagaaaaagtgagtttacagaacatgagatggtcccaacg
agtacaacaatagaagggccatttggaccagcattaaccacctcttcggacgggtttggt
gctgatgattcttcctttatgaactttttcaatactgctgcaactattgggcatacctct
tcaaatgttgagaactctggactgccatatcattatcgagctcaagctgttgatccatca
acccgagttctaagtcccctaccatctcctgctccaattttgcaagtctcattacctgtt
cagtcagctccatcacttcctccacagtcacgccgtgattctgctaacctgattaatagt
gctaattaccctgcaaatcttgtgaagccttctttctttacacctcctgcatcacctgta
ttggtgacaacttctgtctcttcagctacattaactcccgccctttatgctcatgtgaat
ccacaacacccacatggtacacctctagttcaaccctttccaccacctacttcacctcca
tttcttacttctactcagattcctccacaaagtggaacactaagcagagagaaagttcaa
gatgtgcttctaatgcttgtccaggacaatcagtttatcgacttggtctaccaagcgttg
cttaaagtacattcatga
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